79 items (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	XRN1	5'-3' exoribonuclease 1. (1768 aa)
	P2RY4	Pyrimidinergic receptor P2Y4; Belongs to the G-protein coupled receptor 1 family. (368 aa)
	U3KJ11_FICAL	Uncharacterized protein. (64 aa)
	SCNN1B	Sodium channel epithelial 1 beta subunit; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family. (651 aa)
	CAV3	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (151 aa)
	ADCY5	Adenylate cyclase type 5; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling. (1216 aa)
	ADCY1	Adenylate cyclase type 1; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling. (1127 aa)
	LOC101818836	SERPIN domain-containing protein; Belongs to the serpin family. (386 aa)
	LOC101810353	SERPIN domain-containing protein; Belongs to the serpin family. (388 aa)
	U3KEZ1_FICAL	SERPIN domain-containing protein; Belongs to the serpin family. (392 aa)
	DDIT4	DNA damage inducible transcript 4. (184 aa)
	TRERF1	Transcriptional regulating factor 1. (1093 aa)
	PRKAA2	Non-specific serine/threonine protein kinase. (523 aa)
	TGFB2	Transforming growth factor beta; Belongs to the TGF-beta family. (412 aa)
	CYP1B1	Cytochrome P450 family 1 subfamily B member 1; Belongs to the cytochrome P450 family. (525 aa)
	AIFM1	Apoptosis inducing factor mitochondria associated 1. (575 aa)
	TBXA2R	Thromboxane A2 receptor. (341 aa)
	SMYD3	SET and MYND domain containing 3. (257 aa)
	USP8	Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family. (1116 aa)
	U3K9W0_FICAL	Uncharacterized protein. (468 aa)
	NKX3-1	NK3 homeobox 1. (228 aa)
	RWDD1	RWD domain containing 1. (238 aa)
	PCK1	Phosphoenolpyruvate carboxykinase 1. (622 aa)
	CDA	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (157 aa)
	CASP9	Caspase 9; Belongs to the peptidase C14A family. (415 aa)
	GNAI1	G protein subunit alpha i1. (354 aa)
	ABHD2	Abhydrolase domain containing 2. (426 aa)
	CAV1	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (178 aa)
	CFTR	Cystic fibrosis transmembrane conductance regulator; Epithelial ion channel that plays an important role in the regulation of epithelial ion and water transport and fluid homeostasis. Mediates the transport of chloride ions across the cell membrane. Channel activity is coupled to ATP hydrolysis. The ion channel is also permeable to HCO(3-); selectivity depends on the extracellular chloride concentration. Exerts its function also by modulating the activity of other ion channels and transporters. Contributes to the regulation of the pH and the ion content of the epithelial fluid layer. (1403 aa)
	ERRFI1	ERBB receptor feedback inhibitor 1. (464 aa)
	PARK7	Parkinsonism associated deglycase. (191 aa)
	CCL19-2	SCY domain-containing protein. (96 aa)
	CCL19	C-C motif chemokine. (118 aa)
	SLIT3	Slit guidance ligand 3. (1322 aa)
	HOXA10	Homeobox A10. (366 aa)
	HSD3B7	3Beta_HSD domain-containing protein; Belongs to the 3-beta-HSD family. (371 aa)
	SLIT2	Slit guidance ligand 2. (1508 aa)
	TGFBR2	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (543 aa)
	GNAI2	G protein subunit alpha i2. (355 aa)
	PIK3CA	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1068 aa)
	LARP1	La ribonucleoprotein domain family member 1. (815 aa)
	POSTN	Periostin. (857 aa)
	CLDN1	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family. (211 aa)
	ROCK2	Rho associated coiled-coil containing protein kinase 2; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1411 aa)
	TGFB3	Transforming growth factor beta 3. (456 aa)
	PTGFR	Prostaglandin F receptor. (364 aa)
	BCL2L1	BCL2 like 1. (230 aa)
	NR3C2	Nuclear receptor subfamily 3 group C member 2. (987 aa)
	BPIFB2	BPI2 domain-containing protein. (451 aa)
	NDOR1	NADPH-dependent diflavin oxidoreductase 1; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Transfers electrons from NADPH to the Fe/S cluster of CIAPIN1. In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (596 aa)
	DCPS	Decapping enzyme, scavenger. (272 aa)
	LOC101817697	3Beta_HSD domain-containing protein; Belongs to the 3-beta-HSD family. (377 aa)
	LOC101817239	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (181 aa)
	MSTN	Myostatin. (375 aa)
	TFAP4	Transcription factor AP-4. (327 aa)
	MSN	Moesin. (569 aa)
	AR	Androgen receptor. (381 aa)
	UBE3A	Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates. (880 aa)
	CREB1	cAMP responsive element binding protein 1. (327 aa)
	PTGER2	Prostaglandin E receptor 2; Belongs to the G-protein coupled receptor 1 family. (357 aa)
	SLC2A1	Solute carrier family 2 member 1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (483 aa)
	GAS6	Growth arrest specific 6. (634 aa)
	FIBIN	Fin bud initiation factor homolog. (196 aa)
	GNAI3	G protein subunit alpha i3. (354 aa)
	RUSC1	RUN and SH3 domain containing 1. (766 aa)
	TAT	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. (457 aa)
	ADCY8	Adenylate cyclase type 8; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling. (1241 aa)
	BGLAP	Osteocalcin; Binds strongly to apatite and calcium. (101 aa)
	FBXO32	F-box protein 32. (355 aa)
	GOLPH3	Golgi phosphoprotein 3. (272 aa)
	GDNF	Glial cell derived neurotrophic factor. (218 aa)
	PTGER4	Prostaglandin E receptor 4; Belongs to the G-protein coupled receptor 1 family. (474 aa)
	PRKAA1	Non-specific serine/threonine protein kinase. (561 aa)
	RECQL5	RecQ like helicase 5. (1093 aa)
	ACOD1	Aconitate decarboxylase 1. (474 aa)
	AQP1	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (271 aa)
	U3JDI8_FICAL	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (190 aa)
	PGR	Progesterone receptor. (485 aa)
	ADCY6	Adenylate cyclase type 6; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling. (973 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACOD1	AIFM1	ENSFALP00000000906	ENSFALP00000012130	Aconitate decarboxylase 1.	Apoptosis inducing factor mitochondria associated 1.	0.565
ACOD1	U3K9W0_FICAL	ENSFALP00000000906	ENSFALP00000011814	Aconitate decarboxylase 1.	Uncharacterized protein.	0.902
ADCY1	ADCY5	ENSFALP00000013795	ENSFALP00000013939	Adenylate cyclase type 1; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	Adenylate cyclase type 5; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	0.432
ADCY1	ADCY6	ENSFALP00000013795	ENSFALP00000000131	Adenylate cyclase type 1; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	Adenylate cyclase type 6; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	0.429
ADCY1	ADCY8	ENSFALP00000013795	ENSFALP00000002681	Adenylate cyclase type 1; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	Adenylate cyclase type 8; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	0.956
ADCY1	GNAI1	ENSFALP00000013795	ENSFALP00000010922	Adenylate cyclase type 1; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	G protein subunit alpha i1.	0.799
ADCY1	GNAI2	ENSFALP00000013795	ENSFALP00000009199	Adenylate cyclase type 1; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	G protein subunit alpha i2.	0.799
ADCY1	GNAI3	ENSFALP00000013795	ENSFALP00000002995	Adenylate cyclase type 1; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	G protein subunit alpha i3.	0.799
ADCY5	ADCY1	ENSFALP00000013939	ENSFALP00000013795	Adenylate cyclase type 5; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	Adenylate cyclase type 1; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	0.432
ADCY5	ADCY8	ENSFALP00000013939	ENSFALP00000002681	Adenylate cyclase type 5; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	Adenylate cyclase type 8; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	0.434
ADCY5	GNAI1	ENSFALP00000013939	ENSFALP00000010922	Adenylate cyclase type 5; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	G protein subunit alpha i1.	0.771
ADCY5	GNAI2	ENSFALP00000013939	ENSFALP00000009199	Adenylate cyclase type 5; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	G protein subunit alpha i2.	0.771
ADCY5	GNAI3	ENSFALP00000013939	ENSFALP00000002995	Adenylate cyclase type 5; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	G protein subunit alpha i3.	0.771
ADCY5	U3KJ11_FICAL	ENSFALP00000013939	ENSFALP00000015015	Adenylate cyclase type 5; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	Uncharacterized protein.	0.433
ADCY6	ADCY1	ENSFALP00000000131	ENSFALP00000013795	Adenylate cyclase type 6; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	Adenylate cyclase type 1; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	0.429
ADCY6	ADCY8	ENSFALP00000000131	ENSFALP00000002681	Adenylate cyclase type 6; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	Adenylate cyclase type 8; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	0.434
ADCY6	GNAI1	ENSFALP00000000131	ENSFALP00000010922	Adenylate cyclase type 6; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	G protein subunit alpha i1.	0.771
ADCY6	GNAI2	ENSFALP00000000131	ENSFALP00000009199	Adenylate cyclase type 6; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	G protein subunit alpha i2.	0.771
ADCY6	GNAI3	ENSFALP00000000131	ENSFALP00000002995	Adenylate cyclase type 6; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	G protein subunit alpha i3.	0.771
ADCY6	U3KJ11_FICAL	ENSFALP00000000131	ENSFALP00000015015	Adenylate cyclase type 6; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.	Uncharacterized protein.	0.433