56 items (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	COL4A5	Collagen type IV alpha 5 chain. (1697 aa)
	COL4A6	Collagen type IV alpha 6 chain. (1692 aa)
	LAMB3	Laminin subunit beta 3. (1169 aa)
	LOC101817811	Uncharacterized protein. (1152 aa)
	MEGF9	Multiple EGF like domains 9. (396 aa)
	LAMC3	Laminin subunit gamma 3. (1597 aa)
	NTNG2	Netrin G2. (527 aa)
	CASK	Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family. (859 aa)
	LOXL2	Lysyl oxidase like 2. (392 aa)
	EGFLAM	EGF like, fibronectin type III and laminin G domains. (964 aa)
	NTNG1	Netrin G1. (460 aa)
	RELL2	RELT like 2. (232 aa)
	LAMC1	Laminin subunit gamma 1. (1574 aa)
	LAMC2	Laminin subunit gamma 2. (1182 aa)
	SMOC2	SPARC related modular calcium binding 2. (421 aa)
	COL4A1-2	Collagen IV NC1 domain-containing protein. (193 aa)
	HSPG2	Heparan sulfate proteoglycan 2. (4081 aa)
	NID2	Nidogen 2. (1299 aa)
	U3JNH0_FICAL	Uncharacterized protein. (114 aa)
	COL4A2	Collagen type IV alpha 2 chain. (826 aa)
	SMOC1	SPARC related modular calcium binding 1. (388 aa)
	COL8A1	Collagen type VIII alpha 1 chain. (739 aa)
	C11orf53	Chromosome 11 open reading frame 53. (289 aa)
	LAMA3	Laminin subunit alpha 3. (3243 aa)
	MDK	Midkine. (142 aa)
	LAMA1	Laminin subunit alpha 1. (3039 aa)
	U3JVE4_FICAL	Uncharacterized protein. (446 aa)
	FREM1	FRAS1 related extracellular matrix 1. (2183 aa)
	COL4A4	Collagen type IV alpha 4 chain. (1686 aa)
	COL4A3	Collagen type IV alpha 3 chain. (1681 aa)
	P3H2	Prolyl 3-hydroxylase 2. (583 aa)
	U3JYA0_FICAL	Uncharacterized protein. (375 aa)
	MMP2	Matrix metallopeptidase 2. (661 aa)
	SPARC	Secreted protein acidic and cysteine rich. (309 aa)
	U3K1I2_FICAL	Uncharacterized protein. (500 aa)
	FRAS1	Uncharacterized protein. (3786 aa)
	VWA1	Von Willebrand factor A domain containing 1. (502 aa)
	PMP22	Peripheral myelin protein 22. (158 aa)
	LAMB4	Laminin subunit beta 4. (1836 aa)
	LAMB1	Laminin subunit beta 1. (1649 aa)
	COL28A1	Collagen type XXVIII alpha 1 chain. (1159 aa)
	U3K7K5_FICAL	Uncharacterized protein. (1213 aa)
	COL4A1	Collagen type IV alpha 1 chain. (1485 aa)
	NTN4	Netrin 4. (615 aa)
	LAMA4	Laminin subunit alpha 4. (1827 aa)
	U3K965_FICAL	Uncharacterized protein. (773 aa)
	U3KAJ6_FICAL	Uncharacterized protein. (880 aa)
	LAMA2	Uncharacterized protein. (1254 aa)
	U3KAQ1_FICAL	Laminin_I domain-containing protein. (216 aa)
	U3KAQ8_FICAL	Uncharacterized protein. (94 aa)
	USH2A	Usherin. (5219 aa)
	ANXA2	Annexin. (360 aa)
	LOC101807214	Uncharacterized protein. (647 aa)
	FN1	Fibronectin 1. (2307 aa)
	LAMB2	Laminin subunit beta 2. (1642 aa)
	NID1	Nidogen 1. (1153 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASK	NID1	ENSFALP00000001586	ENSFALP00000014092	Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.	Nidogen 1.	0.475
CASK	NID2	ENSFALP00000001586	ENSFALP00000004092	Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.	Nidogen 2.	0.475
COL4A1	COL4A1-2	ENSFALP00000011011	ENSFALP00000003316	Collagen type IV alpha 1 chain.	Collagen IV NC1 domain-containing protein.	0.468
COL4A1	U3K7K5_FICAL	ENSFALP00000011011	ENSFALP00000011009	Collagen type IV alpha 1 chain.	Uncharacterized protein.	0.443
COL4A1-2	COL4A1	ENSFALP00000003316	ENSFALP00000011011	Collagen IV NC1 domain-containing protein.	Collagen type IV alpha 1 chain.	0.468
COL4A1-2	U3K7K5_FICAL	ENSFALP00000003316	ENSFALP00000011009	Collagen IV NC1 domain-containing protein.	Uncharacterized protein.	0.638
COL4A3	COL4A4	ENSFALP00000007219	ENSFALP00000007198	Collagen type IV alpha 3 chain.	Collagen type IV alpha 4 chain.	0.408
COL4A3	U3K7K5_FICAL	ENSFALP00000007219	ENSFALP00000011009	Collagen type IV alpha 3 chain.	Uncharacterized protein.	0.439
COL4A4	COL4A3	ENSFALP00000007198	ENSFALP00000007219	Collagen type IV alpha 4 chain.	Collagen type IV alpha 3 chain.	0.408
COL4A4	U3K7K5_FICAL	ENSFALP00000007198	ENSFALP00000011009	Collagen type IV alpha 4 chain.	Uncharacterized protein.	0.439
COL4A5	U3K7K5_FICAL	ENSFALP00000000190	ENSFALP00000011009	Collagen type IV alpha 5 chain.	Uncharacterized protein.	0.412
COL4A6	U3K7K5_FICAL	ENSFALP00000000194	ENSFALP00000011009	Collagen type IV alpha 6 chain.	Uncharacterized protein.	0.404
COL8A1	P3H2	ENSFALP00000006030	ENSFALP00000007714	Collagen type VIII alpha 1 chain.	Prolyl 3-hydroxylase 2.	0.409
EGFLAM	NID1	ENSFALP00000002124	ENSFALP00000014092	EGF like, fibronectin type III and laminin G domains.	Nidogen 1.	0.472
EGFLAM	NID2	ENSFALP00000002124	ENSFALP00000004092	EGF like, fibronectin type III and laminin G domains.	Nidogen 2.	0.472
EGFLAM	U3JYA0_FICAL	ENSFALP00000002124	ENSFALP00000007754	EGF like, fibronectin type III and laminin G domains.	Uncharacterized protein.	0.491
EGFLAM	USH2A	ENSFALP00000002124	ENSFALP00000012814	EGF like, fibronectin type III and laminin G domains.	Usherin.	0.553
FRAS1	FREM1	ENSFALP00000008903	ENSFALP00000006779	Uncharacterized protein.	FRAS1 related extracellular matrix 1.	0.906
FREM1	FRAS1	ENSFALP00000006779	ENSFALP00000008903	FRAS1 related extracellular matrix 1.	Uncharacterized protein.	0.906
HSPG2	NID1	ENSFALP00000003939	ENSFALP00000014092	Heparan sulfate proteoglycan 2.	Nidogen 1.	0.735