18 items (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RER1	Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment. (198 aa)
	U3JZY9_FICAL	Uncharacterized protein. (138 aa)
	STEAP2	STEAP2 metalloreductase. (483 aa)
	ACER3	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid. (267 aa)
	TPST1	Protein-tyrosine sulfotransferase; Catalyzes the O-sulfation of tyrosine residues within acidic motifs of polypeptides, using 3'-phosphoadenylyl sulfate (PAPS) as cosubstrate; Belongs to the protein sulfotransferase family. (378 aa)
	U3JVL0_FICAL	Uncharacterized protein. (275 aa)
	PCSK7	Proprotein convertase subtilisin/kexin type 7. (738 aa)
	TBC1D20	TBC1 domain family member 20. (384 aa)
	ACER2	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid. (264 aa)
	FKTN	Fukutin. (461 aa)
	MYMK	Myomaker, myoblast fusion factor. (220 aa)
	CHST12	Carbohydrate sulfotransferase. (367 aa)
	SGMS1	Sphingomyelin synthase 1. (413 aa)
	SGMS2	Sphingomyelin synthase 2. (365 aa)
	CASD1	CAS1 domain containing 1. (761 aa)
	UBIAD1	UbiA prenyltransferase domain containing 1. (368 aa)
	ALG12	Mannosyltransferase. (490 aa)
	POMGNT1	Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-). (659 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACER2	SGMS1	ENSFALP00000003207	ENSFALP00000013714	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	Sphingomyelin synthase 1.	0.915
ACER2	SGMS2	ENSFALP00000003207	ENSFALP00000012866	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	Sphingomyelin synthase 2.	0.915
FKTN	POMGNT1	ENSFALP00000003017	ENSFALP00000009913	Fukutin.	Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-).	0.672
POMGNT1	FKTN	ENSFALP00000009913	ENSFALP00000003017	Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-).	Fukutin.	0.672
SGMS1	ACER2	ENSFALP00000013714	ENSFALP00000003207	Sphingomyelin synthase 1.	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	0.915
SGMS1	SGMS2	ENSFALP00000013714	ENSFALP00000012866	Sphingomyelin synthase 1.	Sphingomyelin synthase 2.	0.901
SGMS2	ACER2	ENSFALP00000012866	ENSFALP00000003207	Sphingomyelin synthase 2.	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	0.915
SGMS2	SGMS1	ENSFALP00000012866	ENSFALP00000013714	Sphingomyelin synthase 2.	Sphingomyelin synthase 1.	0.901