91 items (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	U3JTN9_FICAL	Uncharacterized protein. (158 aa)
	RAB7B	RAB7B, member RAS oncogene family. (203 aa)
	RAB29	RAB29, member RAS oncogene family. (205 aa)
	RND2	Rho family GTPase 2. (195 aa)
	U3JDK4_FICAL	Uncharacterized protein. (164 aa)
	LOC101814179	Uncharacterized protein. (208 aa)
	EEF2	Eukaryotic translation elongation factor 2. (858 aa)
	RRAS2	RAS related 2. (210 aa)
	RAB15	RAB15, member RAS oncogene family. (211 aa)
	RAB37	RAB37, member RAS oncogene family. (265 aa)
	RHOBTB2	Rho related BTB domain containing 2. (754 aa)
	ARL6	ADP ribosylation factor like GTPase 6; Belongs to the small GTPase superfamily. Arf family. (213 aa)
	ARL13B	ADP ribosylation factor like GTPase 13B. (398 aa)
	RAB23	RAB23, member RAS oncogene family. (237 aa)
	U3JIU8_FICAL	Uncharacterized protein. (235 aa)
	RAB25	RAB25, member RAS oncogene family. (254 aa)
	RIT1	Ras like without CAAX 1. (184 aa)
	GUF1	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (536 aa)
	RAB44	Uncharacterized protein. (306 aa)
	RHOU	Ras homolog family member U. (184 aa)
	RAB4A	RAB4A, member RAS oncogene family. (218 aa)
	RHOJ	Ras homolog family member J. (214 aa)
	NRAS	NRAS proto-oncogene, GTPase. (156 aa)
	RAB26	RAB26, member RAS oncogene family. (190 aa)
	RASEF	RAS and EF-hand domain containing. (606 aa)
	RAB19	RAB19, member RAS oncogene family. (216 aa)
	KRAS	KRAS proto-oncogene, GTPase. (188 aa)
	CRACR2A	Calcium release activated channel regulator 2A. (700 aa)
	GEM	GTP binding protein overexpressed in skeletal muscle. (297 aa)
	RAB3B	RAB3B, member RAS oncogene family. (226 aa)
	RHOV	Ras homolog family member V. (231 aa)
	ARL9	ADP ribosylation factor like GTPase 9; Belongs to the small GTPase superfamily. Arf family. (188 aa)
	GTPBP4	GTP binding protein 4. (722 aa)
	U3JX31_FICAL	Uncharacterized protein. (213 aa)
	DRG1	Developmentally regulated GTP binding protein 1. (367 aa)
	EFTUD2	Elongation factor Tu GTP binding domain containing 2. (972 aa)
	GFM1	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mito [...] (675 aa)
	RAB35	RAB35, member RAS oncogene family. (213 aa)
	RRAD	RRAD, Ras related glycolysis inhibitor and calcium channel regulator. (271 aa)
	RAB30	RAB30, member RAS oncogene family. (203 aa)
	RAB38	RAB38, member RAS oncogene family. (235 aa)
	RAB7A	RAB7A, member RAS oncogene family. (207 aa)
	SAR1B	Secretion associated Ras related GTPase 1B; Belongs to the small GTPase superfamily. SAR1 family. (197 aa)
	RAB24	RAB24, member RAS oncogene family. (203 aa)
	U3K282_FICAL	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (187 aa)
	RHOA	Ras homolog family member A. (172 aa)
	RIT2	Ras like without CAAX 2. (217 aa)
	RAB5A	RAB5A, member RAS oncogene family. (215 aa)
	RAB28	RAB28, member RAS oncogene family. (198 aa)
	TRIM23	Tripartite motif containing 23. (582 aa)
	RAB8B	RAB8B, member RAS oncogene family. (201 aa)
	RAB11A	RAB11A, member RAS oncogene family. (209 aa)
	LRRK2	Leucine rich repeat kinase 2. (2450 aa)
	RAP1B	RAP1B, member of RAS oncogene family. (184 aa)
	GFM2	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. (784 aa)
	CRACR2B	Calcium release activated channel regulator 2B. (709 aa)
	LOC101812644	Uncharacterized protein. (231 aa)
	VAPB	VAMP associated protein B and C. (228 aa)
	RAB3C	RAB3C, member RAS oncogene family. (219 aa)
	EFL1	Elongation factor like GTPase 1. (1137 aa)
	ARL1	ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	MTIF2	Mitochondrial translational initiation factor 2. (804 aa)
	RAB33A	RAB33A, member RAS oncogene family. (219 aa)
	LOC101808730	Uncharacterized protein. (237 aa)
	RAB11B	Uncharacterized protein. (218 aa)
	HRAS	HRas proto-oncogene, GTPase. (189 aa)
	RHOD	Ras homolog family member D. (209 aa)
	RAB10	RAB10, member RAS oncogene family. (159 aa)
	SAR1A	Secretion associated Ras related GTPase 1A; Belongs to the small GTPase superfamily. SAR1 family. (198 aa)
	RAB17	RAB17, member RAS oncogene family. (213 aa)
	RAC2	Rac family small GTPase 2. (192 aa)
	RAB32	RAB32, member RAS oncogene family. (218 aa)
	MRAS	Muscle RAS oncogene homolog. (208 aa)
	RHOBTB1	Rho related BTB domain containing 1. (694 aa)
	RAB8A	RAB8A, member RAS oncogene family. (207 aa)
	ARL8B	ADP ribosylation factor like GTPase 8B; Belongs to the small GTPase superfamily. Arf family. (169 aa)
	DRG2	Developmentally regulated GTP binding protein 2. (343 aa)
	RASD1	Ras related dexamethasone induced 1. (278 aa)
	RND3	Rho family GTPase 3. (244 aa)
	RAC1	Rac family small GTPase 1. (192 aa)
	DIRAS3	Uncharacterized protein. (198 aa)
	ARL11	ADP ribosylation factor like GTPase 11; Belongs to the small GTPase superfamily. Arf family. (190 aa)
	ARF6	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	RAP2B	RAP2B, member of RAS oncogene family. (183 aa)
	ARL4A	ADP ribosylation factor like GTPase 4A. (200 aa)
	DIRAS2	DIRAS family GTPase 2. (199 aa)
	DIRAS1	DIRAS family GTPase 1. (198 aa)
	RHOB	Ras homolog family member B. (196 aa)
	ARL4C	ADP ribosylation factor like GTPase 4C; Belongs to the small GTPase superfamily. Arf family. (192 aa)
	RAB9B	RAB9B, member RAS oncogene family. (201 aa)
	RAB9A	RAB9A, member RAS oncogene family. (201 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF6	RAB11A	ENSFALP00000015092	ENSFALP00000010486	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	RAB11A, member RAS oncogene family.	0.400
ARF6	RAB11B	ENSFALP00000015092	ENSFALP00000012348	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.400
ARF6	RAB35	ENSFALP00000015092	ENSFALP00000007987	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	RAB35, member RAS oncogene family.	0.648
ARF6	RAB4A	ENSFALP00000015092	ENSFALP00000003461	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	RAB4A, member RAS oncogene family.	0.449
ARF6	U3JIU8_FICAL	ENSFALP00000015092	ENSFALP00000002702	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.400
ARF6	U3JX31_FICAL	ENSFALP00000015092	ENSFALP00000007335	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.449
ARL1	ARL13B	ENSFALP00000011646	ENSFALP00000001718	ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family.	ADP ribosylation factor like GTPase 13B.	0.614
ARL1	RAB19	ENSFALP00000011646	ENSFALP00000003867	ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family.	RAB19, member RAS oncogene family.	0.507
ARL13B	ARL1	ENSFALP00000001718	ENSFALP00000011646	ADP ribosylation factor like GTPase 13B.	ADP ribosylation factor like GTPase 1; Belongs to the small GTPase superfamily. Arf family.	0.614
ARL13B	RAB23	ENSFALP00000001718	ENSFALP00000001778	ADP ribosylation factor like GTPase 13B.	RAB23, member RAS oncogene family.	0.512
ARL13B	RHOJ	ENSFALP00000001718	ENSFALP00000003498	ADP ribosylation factor like GTPase 13B.	Ras homolog family member J.	0.450
ARL13B	U3K282_FICAL	ENSFALP00000001718	ENSFALP00000009136	ADP ribosylation factor like GTPase 13B.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.524
ARL6	RAB11A	ENSFALP00000001709	ENSFALP00000010486	ADP ribosylation factor like GTPase 6; Belongs to the small GTPase superfamily. Arf family.	RAB11A, member RAS oncogene family.	0.415
ARL6	RAB11B	ENSFALP00000001709	ENSFALP00000012348	ADP ribosylation factor like GTPase 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.415
ARL6	U3JIU8_FICAL	ENSFALP00000001709	ENSFALP00000002702	ADP ribosylation factor like GTPase 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.415
DRG1	DRG2	ENSFALP00000007772	ENSFALP00000014353	Developmentally regulated GTP binding protein 1.	Developmentally regulated GTP binding protein 2.	0.597
DRG1	MTIF2	ENSFALP00000007772	ENSFALP00000011739	Developmentally regulated GTP binding protein 1.	Mitochondrial translational initiation factor 2.	0.403
DRG2	DRG1	ENSFALP00000014353	ENSFALP00000007772	Developmentally regulated GTP binding protein 2.	Developmentally regulated GTP binding protein 1.	0.597
DRG2	MTIF2	ENSFALP00000014353	ENSFALP00000011739	Developmentally regulated GTP binding protein 2.	Mitochondrial translational initiation factor 2.	0.403
EEF2	GUF1	ENSFALP00000000896	ENSFALP00000003053	Eukaryotic translation elongation factor 2.	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	0.537