STRINGSTRING
PAFAH1B1 PAFAH1B1 BUB3 BUB3 GNB3 GNB3 RBBP7 RBBP7 COPB2 COPB2 WDR12 WDR12 RBBP4 RBBP4 POC1A POC1A U3K2Q1_FICAL U3K2Q1_FICAL WDR82 WDR82 TRAF7 TRAF7 TBL3 TBL3 TAF5L TAF5L SMU1 SMU1 FBXW11 FBXW11 WDR70 WDR70 WDR44 WDR44 WDR5B WDR5B RRP9 RRP9 TAF5 TAF5 BTRC BTRC WDFY2 WDFY2 TBL1XR1 TBL1XR1 GNB4 GNB4 GEMIN5 GEMIN5 U3K0F8_FICAL U3K0F8_FICAL COPA COPA WDR37 WDR37 DAW1 DAW1 KATNB1 KATNB1 WDR18 WDR18 STRN STRN GNB5 GNB5 PRPF19 PRPF19 PWP2 PWP2 DTL DTL PEX7 PEX7 U3KEQ3_FICAL U3KEQ3_FICAL SPAG16 SPAG16 FBXW7 FBXW7 PLRG1 PLRG1 ATG16L1 ATG16L1 WDR26 WDR26 WDR17 WDR17 ERCC8 ERCC8 APAF1 APAF1 RAE1 RAE1 POC1B POC1B WDR61 WDR61 WDR41 WDR41 STRAP STRAP GNB1 GNB1 WDR1 WDR1 WDR86 WDR86 WDR48 WDR48 NLE1 NLE1 STRN3 STRN3 PRPF4 PRPF4 WDR31 WDR31 WDR3 WDR3 WSB1 WSB1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PAFAH1B1Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family. (410 aa)
BUB3BUB3 mitotic checkpoint protein. (329 aa)
GNB3G protein subunit beta 3. (340 aa)
RBBP7RB binding protein 7, chromatin remodeling factor. (421 aa)
COPB2Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (884 aa)
WDR12WD repeat domain 12. (354 aa)
RBBP4RB binding protein 4, chromatin remodeling factor. (421 aa)
POC1APOC1 centriolar protein A. (405 aa)
U3K2Q1_FICALHSF_DOMAIN domain-containing protein. (134 aa)
WDR82WD repeat domain 82. (600 aa)
TRAF7TNF receptor associated factor 7. (670 aa)
TBL3Transducin beta like 3. (811 aa)
TAF5LTATA-box binding protein associated factor 5 like. (573 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (499 aa)
FBXW11F-box and WD repeat domain containing 11. (531 aa)
WDR70WD repeat domain 70. (642 aa)
WDR44WD repeat domain 44. (906 aa)
WDR5BWD repeat domain 5B. (334 aa)
RRP9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (483 aa)
TAF5TATA-box binding protein associated factor 5. (779 aa)
BTRCBeta-transducin repeat containing E3 ubiquitin protein ligase. (608 aa)
WDFY2WD repeat and FYVE domain containing 2. (376 aa)
TBL1XR1Transducin beta like 1 X-linked receptor 1. (513 aa)
GNB4G protein subunit beta 4. (340 aa)
GEMIN5Gem nuclear organelle associated protein 5. (1530 aa)
U3K0F8_FICALUncharacterized protein. (780 aa)
COPACoatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. (1224 aa)
WDR37WD repeat domain 37. (495 aa)
DAW1WD_REPEATS_REGION domain-containing protein. (354 aa)
KATNB1Katanin p80 WD40 repeat-containing subunit B1; Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. (657 aa)
WDR18WD repeat domain 18. (372 aa)
STRNStriatin. (605 aa)
GNB5G protein subunit beta 5. (353 aa)
PRPF19Pre-mRNA processing factor 19. (504 aa)
PWP2WD_REPEATS_REGION domain-containing protein. (911 aa)
DTLDenticleless E3 ubiquitin protein ligase homolog. (728 aa)
PEX7Peroxisomal biogenesis factor 7. (296 aa)
U3KEQ3_FICALWD_REPEATS_REGION domain-containing protein. (327 aa)
SPAG16Uncharacterized protein. (289 aa)
FBXW7F-box and WD repeat domain containing 7. (589 aa)
PLRG1Pleiotropic regulator 1. (516 aa)
ATG16L1Autophagy related 16 like 1. (562 aa)
WDR26WD repeat domain 26. (568 aa)
WDR17WD repeat domain 17. (1323 aa)
ERCC8ERCC excision repair 8, CSA ubiquitin ligase complex subunit. (341 aa)
APAF1Apoptotic peptidase activating factor 1. (1267 aa)
RAE1Ribonucleic acid export 1. (371 aa)
POC1BPOC1 centriolar protein B. (498 aa)
WDR61WD repeat domain 61. (305 aa)
WDR41WD repeat domain 41. (442 aa)
STRAPSerine/threonine kinase receptor associated protein. (337 aa)
GNB1G protein subunit beta 1. (340 aa)
WDR1WD repeat domain 1. (610 aa)
WDR86WD repeat domain 86. (391 aa)
WDR48WD repeat domain 48. (700 aa)
NLE1Notchless homolog 1. (251 aa)
STRN3Striatin 3. (681 aa)
PRPF4Pre-mRNA processing factor 4. (517 aa)
WDR31WD repeat domain 31. (342 aa)
WDR3WD repeat domain 3. (939 aa)
WSB1WD repeat and SOCS box containing 1. (422 aa)
Your Current Organism:
Ficedula albicollis
NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher
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