47 items (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ITSN1	Intersectin 1. (1704 aa)
	ARHGEF10	Rho guanine nucleotide exchange factor 10. (1353 aa)
	SOS2	SOS Ras/Rho guanine nucleotide exchange factor 2. (1332 aa)
	VAV2	Vav guanine nucleotide exchange factor 2. (892 aa)
	SESTD1	SEC14 and spectrin domain containing 1. (695 aa)
	FGD2	FYVE, RhoGEF and PH domain containing 2. (659 aa)
	ARHGEF10L	Uncharacterized protein. (327 aa)
	VAV3	Vav guanine nucleotide exchange factor 3. (874 aa)
	SOS1	SOS Ras/Rac guanine nucleotide exchange factor 1. (1265 aa)
	ARHGEF33	Rho guanine nucleotide exchange factor 33. (804 aa)
	ARHGEF39	Rho guanine nucleotide exchange factor 39. (340 aa)
	ARHGEF18	Uncharacterized protein. (1122 aa)
	NGEF	Neuronal guanine nucleotide exchange factor. (598 aa)
	KALRN	Kalirin RhoGEF kinase. (2667 aa)
	TRIO	Trio Rho guanine nucleotide exchange factor. (3105 aa)
	ARHGEF17	Rho guanine nucleotide exchange factor 17. (1660 aa)
	MCF2L2	MCF.2 cell line derived transforming sequence-like 2. (1272 aa)
	ARHGEF38	Rho guanine nucleotide exchange factor 38. (780 aa)
	ECT2	Epithelial cell transforming 2. (986 aa)
	ARHGEF3	Rho guanine nucleotide exchange factor 3. (571 aa)
	ARHGEF37	Rho guanine nucleotide exchange factor 37. (791 aa)
	FGD4	FYVE, RhoGEF and PH domain containing 4. (908 aa)
	RASGRF2	Ras protein specific guanine nucleotide releasing factor 2. (1240 aa)
	FGD3	FYVE, RhoGEF and PH domain containing 3. (689 aa)
	U3JVH8_FICAL	DH domain-containing protein. (214 aa)
	ARHGEF16	Rho guanine nucleotide exchange factor 16. (721 aa)
	TNFRSF25	TNF receptor superfamily member 25. (425 aa)
	PLEKHG5	Pleckstrin homology and RhoGEF domain containing G5. (1018 aa)
	AKAP13	A-kinase anchoring protein 13. (2772 aa)
	ARHGEF9	Cdc42 guanine nucleotide exchange factor 9. (640 aa)
	NET1	Neuroepithelial cell transforming 1. (534 aa)
	TIAM2	T cell lymphoma invasion and metastasis 2. (1726 aa)
	ABR	ABR activator of RhoGEF and GTPase. (817 aa)
	ARHGEF12	Rho guanine nucleotide exchange factor 12. (1602 aa)
	AATF	Apoptosis antagonizing transcription factor. (554 aa)
	ARHGEF26	Rho guanine nucleotide exchange factor 26. (579 aa)
	U3JR61_FICAL	TGc domain-containing protein. (676 aa)
	LOC107604091	TGc domain-containing protein. (695 aa)
	TGM6	Transglutaminase 6. (706 aa)
	TIAM1	T cell lymphoma invasion and metastasis 1. (1528 aa)
	ARHGEF5	Uncharacterized protein. (530 aa)
	ARHGEF7	Rho guanine nucleotide exchange factor 7. (705 aa)
	MCF2L	MCF.2 cell line derived transforming sequence like. (1190 aa)
	OBSL1	Obscurin like 1. (2261 aa)
	MCF2	MCF.2 cell line derived transforming sequence. (1080 aa)
	ARHGEF6	Rac/Cdc42 guanine nucleotide exchange factor 6. (773 aa)
	ARHGEF4	Rho guanine nucleotide exchange factor 4. (625 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKAP13	ARHGEF16	ENSFALP00000010861	ENSFALP00000010004	A-kinase anchoring protein 13.	Rho guanine nucleotide exchange factor 16.	0.517
AKAP13	ECT2	ENSFALP00000010861	ENSFALP00000008799	A-kinase anchoring protein 13.	Epithelial cell transforming 2.	0.512
AKAP13	ITSN1	ENSFALP00000010861	ENSFALP00000002437	A-kinase anchoring protein 13.	Intersectin 1.	0.553
AKAP13	KALRN	ENSFALP00000010861	ENSFALP00000014029	A-kinase anchoring protein 13.	Kalirin RhoGEF kinase.	0.437
AKAP13	MCF2	ENSFALP00000010861	ENSFALP00000003973	A-kinase anchoring protein 13.	MCF.2 cell line derived transforming sequence.	0.414
AKAP13	TRIO	ENSFALP00000010861	ENSFALP00000007795	A-kinase anchoring protein 13.	Trio Rho guanine nucleotide exchange factor.	0.437
ARHGEF10	ARHGEF33	ENSFALP00000002032	ENSFALP00000002474	Rho guanine nucleotide exchange factor 10.	Rho guanine nucleotide exchange factor 33.	0.469
ARHGEF12	ARHGEF17	ENSFALP00000006232	ENSFALP00000008321	Rho guanine nucleotide exchange factor 12.	Rho guanine nucleotide exchange factor 17.	0.480
ARHGEF12	ARHGEF33	ENSFALP00000006232	ENSFALP00000002474	Rho guanine nucleotide exchange factor 12.	Rho guanine nucleotide exchange factor 33.	0.425
ARHGEF12	ARHGEF6	ENSFALP00000006232	ENSFALP00000003913	Rho guanine nucleotide exchange factor 12.	Rac/Cdc42 guanine nucleotide exchange factor 6.	0.940
ARHGEF12	ARHGEF7	ENSFALP00000006232	ENSFALP00000004560	Rho guanine nucleotide exchange factor 12.	Rho guanine nucleotide exchange factor 7.	0.433
ARHGEF12	ECT2	ENSFALP00000006232	ENSFALP00000008799	Rho guanine nucleotide exchange factor 12.	Epithelial cell transforming 2.	0.562
ARHGEF12	ITSN1	ENSFALP00000006232	ENSFALP00000002437	Rho guanine nucleotide exchange factor 12.	Intersectin 1.	0.556
ARHGEF12	KALRN	ENSFALP00000006232	ENSFALP00000014029	Rho guanine nucleotide exchange factor 12.	Kalirin RhoGEF kinase.	0.435
ARHGEF12	PLEKHG5	ENSFALP00000006232	ENSFALP00000010233	Rho guanine nucleotide exchange factor 12.	Pleckstrin homology and RhoGEF domain containing G5.	0.434
ARHGEF12	TIAM1	ENSFALP00000006232	ENSFALP00000004895	Rho guanine nucleotide exchange factor 12.	T cell lymphoma invasion and metastasis 1.	0.444
ARHGEF12	TIAM2	ENSFALP00000006232	ENSFALP00000013037	Rho guanine nucleotide exchange factor 12.	T cell lymphoma invasion and metastasis 2.	0.444
ARHGEF12	TNFRSF25	ENSFALP00000006232	ENSFALP00000010223	Rho guanine nucleotide exchange factor 12.	TNF receptor superfamily member 25.	0.434
ARHGEF12	TRIO	ENSFALP00000006232	ENSFALP00000007795	Rho guanine nucleotide exchange factor 12.	Trio Rho guanine nucleotide exchange factor.	0.435
ARHGEF16	AKAP13	ENSFALP00000010004	ENSFALP00000010861	Rho guanine nucleotide exchange factor 16.	A-kinase anchoring protein 13.	0.517