(17 nodes) Vitamin B5 (pantothenate) metabolism network (Ficedula albicollis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PANK3	Pantothenate kinase 3. (355 aa)
	ENPP2	Ectonucleotide pyrophosphatase/phosphodiesterase 2. (861 aa)
	COASY	Coenzyme A synthase. (406 aa)
	AASDHPPT	Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase. (282 aa)
	PANK2	Pantothenate kinase 2. (368 aa)
	PPCDC	Phosphopantothenoylcysteine decarboxylase. (210 aa)
	PANK4	Pantothenate kinase 4; Belongs to the type II pantothenate kinase family. (770 aa)
	SLC5A6	Solute carrier family 5 member 6; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (626 aa)
	CCDC30	Uncharacterized protein. (733 aa)
	PDZD11	PDZ domain containing 11. (118 aa)
	U3JXG8_FICAL	Uncharacterized protein. (1342 aa)
	PANK1	Pantothenate kinase 1. (373 aa)
	DCAKD	Dephospho-CoA kinase domain containing. (232 aa)
	FASN	Fatty acid synthase. (2514 aa)
	LOC101807492	CN hydrolase domain-containing protein. (501 aa)
	SLC25A16	Solute carrier family 25 member 16; Belongs to the mitochondrial carrier (TC 2.A.29) family. (289 aa)
	PPCS	Phosphopantothenoylcysteine synthetase. (298 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AASDHPPT	COASY	ENSFALP00000000455	ENSFALP00000000711	Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase.	Coenzyme A synthase.	0.915
AASDHPPT	FASN	ENSFALP00000000455	ENSFALP00000012209	Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase.	Fatty acid synthase.	0.914
AASDHPPT	U3JXG8_FICAL	ENSFALP00000000455	ENSFALP00000007472	Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase.	Uncharacterized protein.	0.914
CCDC30	COASY	ENSFALP00000004003	ENSFALP00000000711	Uncharacterized protein.	Coenzyme A synthase.	0.941
CCDC30	DCAKD	ENSFALP00000004003	ENSFALP00000009822	Uncharacterized protein.	Dephospho-CoA kinase domain containing.	0.516
CCDC30	PANK1	ENSFALP00000004003	ENSFALP00000008032	Uncharacterized protein.	Pantothenate kinase 1.	0.422
CCDC30	PANK2	ENSFALP00000004003	ENSFALP00000000191	Uncharacterized protein.	Pantothenate kinase 2.	0.422
CCDC30	PANK3	ENSFALP00000004003	ENSFALP00000010099	Uncharacterized protein.	Pantothenate kinase 3.	0.422
CCDC30	PANK4	ENSFALP00000004003	ENSFALP00000009958	Uncharacterized protein.	Pantothenate kinase 4; Belongs to the type II pantothenate kinase family.	0.912
CCDC30	PPCDC	ENSFALP00000004003	ENSFALP00000011319	Uncharacterized protein.	Phosphopantothenoylcysteine decarboxylase.	0.631
COASY	AASDHPPT	ENSFALP00000000711	ENSFALP00000000455	Coenzyme A synthase.	Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase.	0.915
COASY	CCDC30	ENSFALP00000000711	ENSFALP00000004003	Coenzyme A synthase.	Uncharacterized protein.	0.941
COASY	DCAKD	ENSFALP00000000711	ENSFALP00000009822	Coenzyme A synthase.	Dephospho-CoA kinase domain containing.	0.829
COASY	PANK1	ENSFALP00000000711	ENSFALP00000008032	Coenzyme A synthase.	Pantothenate kinase 1.	0.967
COASY	PANK2	ENSFALP00000000711	ENSFALP00000000191	Coenzyme A synthase.	Pantothenate kinase 2.	0.967
COASY	PANK3	ENSFALP00000000711	ENSFALP00000010099	Coenzyme A synthase.	Pantothenate kinase 3.	0.967
COASY	PANK4	ENSFALP00000000711	ENSFALP00000009958	Coenzyme A synthase.	Pantothenate kinase 4; Belongs to the type II pantothenate kinase family.	0.690
COASY	PPCDC	ENSFALP00000000711	ENSFALP00000011319	Coenzyme A synthase.	Phosphopantothenoylcysteine decarboxylase.	0.993
COASY	PPCS	ENSFALP00000000711	ENSFALP00000003999	Coenzyme A synthase.	Phosphopantothenoylcysteine synthetase.	0.941
DCAKD	CCDC30	ENSFALP00000009822	ENSFALP00000004003	Dephospho-CoA kinase domain containing.	Uncharacterized protein.	0.516