8 items (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANK2	Ankyrin 2. (3728 aa)
	SCN4A	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1805 aa)
	CHL1	Cell adhesion molecule L1 like. (1157 aa)
	ANK3	Ankyrin 3. (4319 aa)
	NRCAM	Neuronal cell adhesion molecule. (1325 aa)
	U3K3X5_FICAL	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1826 aa)
	ANK1	Ankyrin 1. (1837 aa)
	LOC101810276	Uncharacterized protein. (137 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANK1	CHL1	ENSFALP00000006700	ENSFALP00000014049	Ankyrin 1.	Cell adhesion molecule L1 like.	0.509
ANK1	NRCAM	ENSFALP00000006700	ENSFALP00000010735	Ankyrin 1.	Neuronal cell adhesion molecule.	0.552
ANK2	CHL1	ENSFALP00000001080	ENSFALP00000014049	Ankyrin 2.	Cell adhesion molecule L1 like.	0.509
ANK2	NRCAM	ENSFALP00000001080	ENSFALP00000010735	Ankyrin 2.	Neuronal cell adhesion molecule.	0.509
ANK3	CHL1	ENSFALP00000013989	ENSFALP00000014049	Ankyrin 3.	Cell adhesion molecule L1 like.	0.509
ANK3	NRCAM	ENSFALP00000013989	ENSFALP00000010735	Ankyrin 3.	Neuronal cell adhesion molecule.	0.509
CHL1	ANK1	ENSFALP00000014049	ENSFALP00000006700	Cell adhesion molecule L1 like.	Ankyrin 1.	0.509
CHL1	ANK2	ENSFALP00000014049	ENSFALP00000001080	Cell adhesion molecule L1 like.	Ankyrin 2.	0.509
CHL1	ANK3	ENSFALP00000014049	ENSFALP00000013989	Cell adhesion molecule L1 like.	Ankyrin 3.	0.509
NRCAM	ANK1	ENSFALP00000010735	ENSFALP00000006700	Neuronal cell adhesion molecule.	Ankyrin 1.	0.552
NRCAM	ANK2	ENSFALP00000010735	ENSFALP00000001080	Neuronal cell adhesion molecule.	Ankyrin 2.	0.509
NRCAM	ANK3	ENSFALP00000010735	ENSFALP00000013989	Neuronal cell adhesion molecule.	Ankyrin 3.	0.509
SCN4A	U3K3X5_FICAL	ENSFALP00000014299	ENSFALP00000009729	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.496
U3K3X5_FICAL	SCN4A	ENSFALP00000009729	ENSFALP00000014299	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.496