41 items (Ficedula albicollis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACAT1	Acetyl-CoA acetyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family. (337 aa)
	HMGCL	3-hydroxy-3-methylglutaryl-CoA lyase. (327 aa)
	IVD	Isovaleryl-CoA dehydrogenase. (371 aa)
	U3JFH3_FICAL	Uncharacterized protein. (422 aa)
	HMGCLL1	3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1. (245 aa)
	OXCT1	Succinyl-CoA:3-ketoacid-coenzyme A transferase; Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate. (517 aa)
	AGXT2	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (467 aa)
	ALDH7A1	Aldehyde dehydrogenase 7 family member A1; Belongs to the aldehyde dehydrogenase family. (475 aa)
	BCAT1	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (443 aa)
	BCKDHB	Branched chain keto acid dehydrogenase E1 subunit beta. (322 aa)
	ACSF3	Acyl-CoA synthetase family member 3. (580 aa)
	HMGCS2	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. (504 aa)
	ABAT	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (500 aa)
	AOX1	Aldehyde oxidase 1. (1348 aa)
	PCCA	Propionyl-CoA carboxylase subunit alpha. (707 aa)
	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family. (409 aa)
	AUH	AU RNA binding methylglutaconyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (290 aa)
	ACAD8	Acyl-CoA dehydrogenase family member 8. (455 aa)
	ALDH6A1	Aldehyde dehydrogenase 6 family member A1. (535 aa)
	ACAA1	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family. (429 aa)
	ACADS	Acyl-CoA dehydrogenase short chain. (373 aa)
	ALDH9A1	Aldehyde dehydrogenase 9 family member A1; Belongs to the aldehyde dehydrogenase family. (427 aa)
	MCCC1	Methylcrotonoyl-CoA carboxylase 1. (715 aa)
	IL4I1	Amine oxidase. (530 aa)
	ACAA2	Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family. (338 aa)
	ALDH2	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (490 aa)
	ACADM	Acyl-CoA dehydrogenase medium chain. (414 aa)
	HIBADH	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family. (301 aa)
	AACS	Acetoacetyl-CoA synthetase. (641 aa)
	DLD	Dihydrolipoyl dehydrogenase. (508 aa)
	HMGCS1	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. (522 aa)
	ACAT2	Acetyl-CoA acetyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family. (394 aa)
	MCCC2	Methylcrotonoyl-CoA carboxylase 2. (577 aa)
	HADH	Hydroxyacyl-CoA dehydrogenase. (271 aa)
	HADHA	Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family. (754 aa)
	MCEE	Methylmalonyl-CoA epimerase. (172 aa)
	HADHB	Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta; Belongs to the thiolase-like superfamily. Thiolase family. (473 aa)
	MMUT	Methylmalonyl-CoA mutase. (740 aa)
	LOC101808861	Uncharacterized protein. (631 aa)
	ECHS1	Enoyl-CoA hydratase, short chain 1; Belongs to the enoyl-CoA hydratase/isomerase family. (292 aa)
	EHHADH	Enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. (725 aa)

Your Current Organism:

Ficedula albicollis

NCBI taxonomy Id: 59894
Other names: F. albicollis, collared flycatcher

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AACS	ACAA1	ENSFALP00000009820	ENSFALP00000006867	Acetoacetyl-CoA synthetase.	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.512
AACS	ACAA2	ENSFALP00000009820	ENSFALP00000009369	Acetoacetyl-CoA synthetase.	Acetyl-CoA acyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	0.509
AACS	ACAT1	ENSFALP00000009820	ENSFALP00000000469	Acetoacetyl-CoA synthetase.	Acetyl-CoA acetyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.959
AACS	ACAT2	ENSFALP00000009820	ENSFALP00000012639	Acetoacetyl-CoA synthetase.	Acetyl-CoA acetyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	0.951
AACS	ACSF3	ENSFALP00000009820	ENSFALP00000003409	Acetoacetyl-CoA synthetase.	Acyl-CoA synthetase family member 3.	0.475
AACS	ALDH2	ENSFALP00000009820	ENSFALP00000009382	Acetoacetyl-CoA synthetase.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.448
AACS	ALDH7A1	ENSFALP00000009820	ENSFALP00000002691	Acetoacetyl-CoA synthetase.	Aldehyde dehydrogenase 7 family member A1; Belongs to the aldehyde dehydrogenase family.	0.425
AACS	ALDH9A1	ENSFALP00000009820	ENSFALP00000008302	Acetoacetyl-CoA synthetase.	Aldehyde dehydrogenase 9 family member A1; Belongs to the aldehyde dehydrogenase family.	0.448
AACS	AUH	ENSFALP00000009820	ENSFALP00000004960	Acetoacetyl-CoA synthetase.	AU RNA binding methylglutaconyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.406
AACS	ECHS1	ENSFALP00000009820	ENSFALP00000013600	Acetoacetyl-CoA synthetase.	Enoyl-CoA hydratase, short chain 1; Belongs to the enoyl-CoA hydratase/isomerase family.	0.436
AACS	EHHADH	ENSFALP00000009820	ENSFALP00000014034	Acetoacetyl-CoA synthetase.	Enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.939
AACS	HADH	ENSFALP00000009820	ENSFALP00000012827	Acetoacetyl-CoA synthetase.	Hydroxyacyl-CoA dehydrogenase.	0.950
AACS	HADHA	ENSFALP00000009820	ENSFALP00000013038	Acetoacetyl-CoA synthetase.	Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family.	0.415
AACS	HADHB	ENSFALP00000009820	ENSFALP00000013075	Acetoacetyl-CoA synthetase.	Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta; Belongs to the thiolase-like superfamily. Thiolase family.	0.553
AACS	HIBCH	ENSFALP00000009820	ENSFALP00000004573	Acetoacetyl-CoA synthetase.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.406
AACS	HMGCL	ENSFALP00000009820	ENSFALP00000000526	Acetoacetyl-CoA synthetase.	3-hydroxy-3-methylglutaryl-CoA lyase.	0.942
AACS	HMGCLL1	ENSFALP00000009820	ENSFALP00000001900	Acetoacetyl-CoA synthetase.	3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1.	0.942
AACS	HMGCS1	ENSFALP00000009820	ENSFALP00000011630	Acetoacetyl-CoA synthetase.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.940
AACS	HMGCS2	ENSFALP00000009820	ENSFALP00000003883	Acetoacetyl-CoA synthetase.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.928
AACS	IVD	ENSFALP00000009820	ENSFALP00000001151	Acetoacetyl-CoA synthetase.	Isovaleryl-CoA dehydrogenase.	0.435