15 items (Cynara cardunculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	Ccrd_008544	GDP-fucose protein O-fucosyltransferase. (575 aa)
	Ccrd_006828	Uncharacterized protein. (384 aa)
	Ccrd_003350	Uncharacterized protein. (225 aa)
	Ccrd_000457	X8-like protein. (195 aa)
	Ccrd_023440	B3 DNA binding domain-containing protein. (172 aa)
	Ccrd_015056	Uncharacterized protein. (459 aa)
	Ccrd_010788	Zinc finger, C2H2. (141 aa)
	Ccrd_010450	Germin-like protein. (204 aa)
	Ccrd_009806	Calmodulin binding protein-like protein. (641 aa)
	Ccrd_008464	Uncharacterized protein. (176 aa)
	Ccrd_000908	Uncharacterized protein. (413 aa)
	Ccrd_015184	GDP-fucose protein O-fucosyltransferase. (523 aa)
	Ccrd_001030	Nodulin-like protein. (135 aa)
	Ccrd_000996	Calmodulin binding protein-like protein. (547 aa)
	Ccrd_023556	Calmodulin binding protein-like protein. (358 aa)

Your Current Organism:

Cynara cardunculus

NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ccrd_000457	Ccrd_000908	A0A103XV32	A0A118JX54	X8-like protein.	Uncharacterized protein.	0.533
Ccrd_000457	Ccrd_000996	A0A103XV32	A0A124SDH2	X8-like protein.	Calmodulin binding protein-like protein.	0.498
Ccrd_000457	Ccrd_001030	A0A103XV32	A0A124SDG5	X8-like protein.	Nodulin-like protein.	0.517
Ccrd_000457	Ccrd_003350	A0A103XV32	A0A103XPK7	X8-like protein.	Uncharacterized protein.	0.482
Ccrd_000457	Ccrd_006828	A0A103XV32	A0A103XI58	X8-like protein.	Uncharacterized protein.	0.489
Ccrd_000457	Ccrd_008464	A0A103XV32	A0A118JST8	X8-like protein.	Uncharacterized protein.	0.475
Ccrd_000457	Ccrd_008544	A0A103XV32	A0A103XEV1	X8-like protein.	GDP-fucose protein O-fucosyltransferase.	0.489
Ccrd_000457	Ccrd_009806	A0A103XV32	A0A103YME4	X8-like protein.	Calmodulin binding protein-like protein.	0.483
Ccrd_000457	Ccrd_010450	A0A103XV32	A0A103YL75	X8-like protein.	Germin-like protein.	0.502
Ccrd_000457	Ccrd_010788	A0A103XV32	A0A103YKF5	X8-like protein.	Zinc finger, C2H2.	0.507
Ccrd_000457	Ccrd_015056	A0A103XV32	A0A103YCI5	X8-like protein.	Uncharacterized protein.	0.481
Ccrd_000457	Ccrd_015184	A0A103XV32	A0A118K3U6	X8-like protein.	GDP-fucose protein O-fucosyltransferase.	0.486
Ccrd_000457	Ccrd_023440	A0A103XV32	A0A103XWT5	X8-like protein.	B3 DNA binding domain-containing protein.	0.410
Ccrd_000457	Ccrd_023556	A0A103XV32	A0A124SDW4	X8-like protein.	Calmodulin binding protein-like protein.	0.483
Ccrd_000908	Ccrd_000457	A0A118JX54	A0A103XV32	Uncharacterized protein.	X8-like protein.	0.533
Ccrd_000908	Ccrd_000996	A0A118JX54	A0A124SDH2	Uncharacterized protein.	Calmodulin binding protein-like protein.	0.519
Ccrd_000908	Ccrd_001030	A0A118JX54	A0A124SDG5	Uncharacterized protein.	Nodulin-like protein.	0.487
Ccrd_000908	Ccrd_003350	A0A118JX54	A0A103XPK7	Uncharacterized protein.	Uncharacterized protein.	0.520
Ccrd_000908	Ccrd_006828	A0A118JX54	A0A103XI58	Uncharacterized protein.	Uncharacterized protein.	0.515
Ccrd_000908	Ccrd_008464	A0A118JX54	A0A118JST8	Uncharacterized protein.	Uncharacterized protein.	0.455

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