44 items (Cynara cardunculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ccrd_025651	Transcription factor, MADS-box. (78 aa)
	Ccrd_011924	Transcription factor, MADS-box. (517 aa)
	Ccrd_011921	Transcription factor, MADS-box. (241 aa)
	Ccrd_016390	Transcription factor, MADS-box. (81 aa)
	Ccrd_016924	Uncharacterized protein. (192 aa)
	Ccrd_018507	Transcription factor, K-box. (220 aa)
	Ccrd_022476	Transcription factor, K-box. (178 aa)
	Ccrd_023302	Transcription factor, K-box. (273 aa)
	Ccrd_023124	Transcription factor, K-box. (170 aa)
	Ccrd_001029	Transcription factor, K-box. (211 aa)
	Ccrd_026500	MADS-box domain-containing protein. (232 aa)
	Ccrd_011927	Transcription factor, MADS-box. (227 aa)
	Ccrd_012257	Transcription factor, MADS-box. (233 aa)
	Ccrd_012382	Transcription factor, MADS-box. (126 aa)
	Ccrd_012629	Transcription factor, K-box. (189 aa)
	Ccrd_012966	Uncharacterized protein. (233 aa)
	Ccrd_013801	Transcription factor, MADS-box. (199 aa)
	Ccrd_015131	Transcription factor, K-box. (229 aa)
	Ccrd_015202	Transcription factor, K-box. (241 aa)
	Ccrd_015483	Transcription factor, K-box. (159 aa)
	Ccrd_015893	Transcription factor, K-box. (215 aa)
	Ccrd_018826	Transcription factor, MADS-box. (139 aa)
	Ccrd_018944	Transcription factor, K-box. (172 aa)
	Ccrd_019107	Transcription factor, MADS-box. (86 aa)
	Ccrd_020976	Transcription factor, K-box. (198 aa)
	Ccrd_021135	Transcription factor, MADS-box. (232 aa)
	Ccrd_022071	Transcription factor, K-box. (202 aa)
	Ccrd_022285	MADS-box domain-containing protein. (200 aa)
	Ccrd_022453	Uncharacterized protein. (232 aa)
	Ccrd_023303	Transcription factor, MADS-box. (74 aa)
	Ccrd_000029	Transcription factor, MADS-box. (318 aa)
	Ccrd_002221	Transcription factor, K-box. (145 aa)
	Ccrd_002962	Transcription factor, K-box. (234 aa)
	Ccrd_004583	MADS-box domain-containing protein. (93 aa)
	Ccrd_005335	Transcription factor, K-box. (142 aa)
	Ccrd_006645	Transcription factor, MADS-box. (203 aa)
	Ccrd_006817	Transcription factor, MADS-box. (128 aa)
	Ccrd_008577	Transcription factor, K-box. (185 aa)
	Ccrd_008851	Transcription factor, K-box. (216 aa)
	Ccrd_024278	Transcription factor, K-box. (218 aa)
	Ccrd_024544	Transcription factor, K-box. (176 aa)
	Ccrd_022089	Transcription factor, K-box. (356 aa)
	Ccrd_022244	Transcription factor, K-box. (325 aa)
	Ccrd_010725	MADS-box domain-containing protein. (89 aa)

Your Current Organism:

Cynara cardunculus

NCBI taxonomy Id: 59895
Other names: C. cardunculus var. scolymus, Cynara cardunculus Scolymus Group, Cynara cardunculus subsp. scolymus, Cynara cardunculus subsp. scolymus (L.) Hayek, Cynara cardunculus var. scolymus, Cynara cardunculus var. scolymus (L.) Fiori, Cynara scolymus, Cynara scolymus L., artichoke, globe artichoke

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ccrd_001029	Ccrd_002221	A0A118JXE9	A0A103XRV2	Transcription factor, K-box.	Transcription factor, K-box.	0.505
Ccrd_001029	Ccrd_015893	A0A118JXE9	A0A103YAW9	Transcription factor, K-box.	Transcription factor, K-box.	0.520
Ccrd_002221	Ccrd_001029	A0A103XRV2	A0A118JXE9	Transcription factor, K-box.	Transcription factor, K-box.	0.505
Ccrd_002221	Ccrd_008577	A0A103XRV2	A0A103XEU0	Transcription factor, K-box.	Transcription factor, K-box.	0.509
Ccrd_002221	Ccrd_015131	A0A103XRV2	A0A103YCE3	Transcription factor, K-box.	Transcription factor, K-box.	0.445
Ccrd_002221	Ccrd_022453	A0A103XRV2	A0A103XYT0	Transcription factor, K-box.	Uncharacterized protein.	0.445
Ccrd_002221	Ccrd_025651	A0A103XRV2	A0A124S2B0	Transcription factor, K-box.	Transcription factor, MADS-box.	0.487
Ccrd_008577	Ccrd_002221	A0A103XEU0	A0A103XRV2	Transcription factor, K-box.	Transcription factor, K-box.	0.509
Ccrd_008577	Ccrd_015893	A0A103XEU0	A0A103YAW9	Transcription factor, K-box.	Transcription factor, K-box.	0.524
Ccrd_015131	Ccrd_002221	A0A103YCE3	A0A103XRV2	Transcription factor, K-box.	Transcription factor, K-box.	0.445
Ccrd_015131	Ccrd_015893	A0A103YCE3	A0A103YAW9	Transcription factor, K-box.	Transcription factor, K-box.	0.472
Ccrd_015131	Ccrd_023124	A0A103YCE3	A0A118JYI3	Transcription factor, K-box.	Transcription factor, K-box.	0.756
Ccrd_015893	Ccrd_001029	A0A103YAW9	A0A118JXE9	Transcription factor, K-box.	Transcription factor, K-box.	0.520
Ccrd_015893	Ccrd_008577	A0A103YAW9	A0A103XEU0	Transcription factor, K-box.	Transcription factor, K-box.	0.524
Ccrd_015893	Ccrd_015131	A0A103YAW9	A0A103YCE3	Transcription factor, K-box.	Transcription factor, K-box.	0.472
Ccrd_015893	Ccrd_022453	A0A103YAW9	A0A103XYT0	Transcription factor, K-box.	Uncharacterized protein.	0.472
Ccrd_015893	Ccrd_025651	A0A103YAW9	A0A124S2B0	Transcription factor, K-box.	Transcription factor, MADS-box.	0.486
Ccrd_022453	Ccrd_002221	A0A103XYT0	A0A103XRV2	Uncharacterized protein.	Transcription factor, K-box.	0.445
Ccrd_022453	Ccrd_015893	A0A103XYT0	A0A103YAW9	Uncharacterized protein.	Transcription factor, K-box.	0.472
Ccrd_022453	Ccrd_023124	A0A103XYT0	A0A118JYI3	Uncharacterized protein.	Transcription factor, K-box.	0.755

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