STRINGSTRING
crtQ crtQ crtB,pys crtB,pys pds,crtD pds,crtD crtL2 crtL2 crtL1 crtL1 crtH crtH crtR crtR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
crtQZeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. (484 aa)
crtB,pysSqualene and phytoene synthases; Alternative locus ID: PMED4_01491. (302 aa)
pds,crtDPhytoene desaturase; Alternative locus ID: PMED4_01501. (473 aa)
crtL2Putative lycopene epsilon cyclase; Alternative locus ID: PMED4_06831. (427 aa)
crtL1Putative lycopene beta cyclase; Alternative locus ID: PMED4_12101. (403 aa)
crtHPutative carotenoid isomerase; Alternative locus ID: PMED4_12611. (533 aa)
crtRBeta carotene hydroxylase. (260 aa)
Your Current Organism:
Prochlorococcus marinus pastoris
NCBI taxonomy Id: 59919
Other names: P. marinus subsp. pastoris str. CCMP1986, Prochlorococcus marinus MED4, Prochlorococcus marinus subsp. pastoris str. CCMP1378, Prochlorococcus marinus subsp. pastoris str. CCMP1986, Prochlorococcus sp. CCMP1378, Prochlorococcus sp. MED4
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