(14 nodes) Valine, leucine and isoleucine biosynthesis network (Fibroporia radiculosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_01867	ACT domain-containing protein. (354 aa)
	FIBRA_02537	Pyruvate carboxyltransferase domain-containing protein. (801 aa)
	FIBRA_04914	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (410 aa)
	FIBRA_06302	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (404 aa)
	FIBRA_04221	Acetolactate synthase. (699 aa)
	FIBRA_07172	Pyruvate carboxyltransferase domain-containing protein; Belongs to the alpha-IPM synthase/homocitrate synthase family. (487 aa)
	FIBRA_01187	Uncharacterized protein. (1801 aa)
	FIBRA_02706	3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. (381 aa)
	FIBRA_03989	Uncharacterized protein. (585 aa)
	FIBRA_00688	PALP domain-containing protein. (305 aa)
	FIBRA_01499	Uncharacterized protein. (111 aa)
	FIBRA_04990	PALP domain-containing protein. (388 aa)
	FIBRA_05625	Uncharacterized protein. (448 aa)
	FIBRA_07953	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (708 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_00688	FIBRA_01187	J4I828	J4HSW8	PALP domain-containing protein.	Uncharacterized protein.	0.474
FIBRA_00688	FIBRA_01499	J4I828	J4I8I7	PALP domain-containing protein.	Uncharacterized protein.	0.745
FIBRA_00688	FIBRA_01867	J4I828	J4G181	PALP domain-containing protein.	ACT domain-containing protein.	0.934
FIBRA_00688	FIBRA_02706	J4I828	J4HVC8	PALP domain-containing protein.	3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.	0.775
FIBRA_00688	FIBRA_03989	J4I828	J4HWA4	PALP domain-containing protein.	Uncharacterized protein.	0.797
FIBRA_00688	FIBRA_04221	J4I828	J4H2U7	PALP domain-containing protein.	Acetolactate synthase.	0.893
FIBRA_00688	FIBRA_04914	J4I828	J4G859	PALP domain-containing protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.806
FIBRA_00688	FIBRA_04990	J4I828	J4IAG6	PALP domain-containing protein.	PALP domain-containing protein.	0.760
FIBRA_00688	FIBRA_05625	J4I828	J4IAT9	PALP domain-containing protein.	Uncharacterized protein.	0.741
FIBRA_00688	FIBRA_06302	J4I828	J4GSH9	PALP domain-containing protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.842
FIBRA_00688	FIBRA_07953	J4I828	J4IC35	PALP domain-containing protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.806
FIBRA_01187	FIBRA_00688	J4HSW8	J4I828	Uncharacterized protein.	PALP domain-containing protein.	0.474
FIBRA_01187	FIBRA_01499	J4HSW8	J4I8I7	Uncharacterized protein.	Uncharacterized protein.	0.473
FIBRA_01187	FIBRA_01867	J4HSW8	J4G181	Uncharacterized protein.	ACT domain-containing protein.	0.932
FIBRA_01187	FIBRA_02537	J4HSW8	J4G1T6	Uncharacterized protein.	Pyruvate carboxyltransferase domain-containing protein.	0.968
FIBRA_01187	FIBRA_02706	J4HSW8	J4HVC8	Uncharacterized protein.	3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.	0.964
FIBRA_01187	FIBRA_03989	J4HSW8	J4HWA4	Uncharacterized protein.	Uncharacterized protein.	0.931
FIBRA_01187	FIBRA_04221	J4HSW8	J4H2U7	Uncharacterized protein.	Acetolactate synthase.	0.920
FIBRA_01187	FIBRA_04914	J4HSW8	J4G859	Uncharacterized protein.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.580
FIBRA_01187	FIBRA_04990	J4HSW8	J4IAG6	Uncharacterized protein.	PALP domain-containing protein.	0.473