6 items (Fibroporia radiculosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_01228	Uncharacterized protein. (313 aa)
	FIBRA_03256	Uncharacterized protein. (463 aa)
	FIBRA_07852	Uncharacterized protein. (583 aa)
	FIBRA_04048	Uncharacterized protein. (342 aa)
	FIBRA_01060	Uncharacterized protein. (776 aa)
	FIBRA_00222	PIG-P domain-containing protein. (164 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_00222	FIBRA_01228	J7SCM0	J4G0V5	PIG-P domain-containing protein.	Uncharacterized protein.	0.843
FIBRA_00222	FIBRA_03256	J7SCM0	J4G4S1	PIG-P domain-containing protein.	Uncharacterized protein.	0.944
FIBRA_00222	FIBRA_04048	J7SCM0	J4GNW3	PIG-P domain-containing protein.	Uncharacterized protein.	0.884
FIBRA_00222	FIBRA_07852	J7SCM0	J4GFQ6	PIG-P domain-containing protein.	Uncharacterized protein.	0.864
FIBRA_01060	FIBRA_01228	J4H0W3	J4G0V5	Uncharacterized protein.	Uncharacterized protein.	0.864
FIBRA_01228	FIBRA_00222	J4G0V5	J7SCM0	Uncharacterized protein.	PIG-P domain-containing protein.	0.843
FIBRA_01228	FIBRA_01060	J4G0V5	J4H0W3	Uncharacterized protein.	Uncharacterized protein.	0.864
FIBRA_01228	FIBRA_03256	J4G0V5	J4G4S1	Uncharacterized protein.	Uncharacterized protein.	0.862
FIBRA_01228	FIBRA_04048	J4G0V5	J4GNW3	Uncharacterized protein.	Uncharacterized protein.	0.843
FIBRA_01228	FIBRA_07852	J4G0V5	J4GFQ6	Uncharacterized protein.	Uncharacterized protein.	0.843
FIBRA_03256	FIBRA_00222	J4G4S1	J7SCM0	Uncharacterized protein.	PIG-P domain-containing protein.	0.944
FIBRA_03256	FIBRA_01228	J4G4S1	J4G0V5	Uncharacterized protein.	Uncharacterized protein.	0.862
FIBRA_03256	FIBRA_04048	J4G4S1	J4GNW3	Uncharacterized protein.	Uncharacterized protein.	0.946
FIBRA_03256	FIBRA_07852	J4G4S1	J4GFQ6	Uncharacterized protein.	Uncharacterized protein.	0.933
FIBRA_04048	FIBRA_00222	J4GNW3	J7SCM0	Uncharacterized protein.	PIG-P domain-containing protein.	0.884
FIBRA_04048	FIBRA_01228	J4GNW3	J4G0V5	Uncharacterized protein.	Uncharacterized protein.	0.843
FIBRA_04048	FIBRA_03256	J4GNW3	J4G4S1	Uncharacterized protein.	Uncharacterized protein.	0.946
FIBRA_04048	FIBRA_07852	J4GNW3	J4GFQ6	Uncharacterized protein.	Uncharacterized protein.	0.871
FIBRA_07852	FIBRA_00222	J4GFQ6	J7SCM0	Uncharacterized protein.	PIG-P domain-containing protein.	0.864
FIBRA_07852	FIBRA_01228	J4GFQ6	J4G0V5	Uncharacterized protein.	Uncharacterized protein.	0.843