5 items (Fibroporia radiculosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_07733	Uncharacterized protein. (751 aa)
	FIBRA_08708	Protein kinase domain-containing protein. (267 aa)
	FIBRA_06346	Uncharacterized protein. (667 aa)
	FIBRA_07268	Uncharacterized protein. (1487 aa)
	FIBRA_02113	Ras-GAP domain-containing protein. (405 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_02113	FIBRA_06346	J4I8V8	J4H411	Ras-GAP domain-containing protein.	Uncharacterized protein.	0.665
FIBRA_02113	FIBRA_07268	J4I8V8	J4I0E5	Ras-GAP domain-containing protein.	Uncharacterized protein.	0.807
FIBRA_02113	FIBRA_07733	J4I8V8	J4GVI6	Ras-GAP domain-containing protein.	Uncharacterized protein.	0.823
FIBRA_02113	FIBRA_08708	J4I8V8	J4GXA5	Ras-GAP domain-containing protein.	Protein kinase domain-containing protein.	0.650
FIBRA_06346	FIBRA_02113	J4H411	J4I8V8	Uncharacterized protein.	Ras-GAP domain-containing protein.	0.665
FIBRA_06346	FIBRA_07268	J4H411	J4I0E5	Uncharacterized protein.	Uncharacterized protein.	0.996
FIBRA_06346	FIBRA_07733	J4H411	J4GVI6	Uncharacterized protein.	Uncharacterized protein.	0.762
FIBRA_06346	FIBRA_08708	J4H411	J4GXA5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.731
FIBRA_07268	FIBRA_02113	J4I0E5	J4I8V8	Uncharacterized protein.	Ras-GAP domain-containing protein.	0.807
FIBRA_07268	FIBRA_06346	J4I0E5	J4H411	Uncharacterized protein.	Uncharacterized protein.	0.996
FIBRA_07268	FIBRA_07733	J4I0E5	J4GVI6	Uncharacterized protein.	Uncharacterized protein.	0.999
FIBRA_07268	FIBRA_08708	J4I0E5	J4GXA5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.981
FIBRA_07733	FIBRA_02113	J4GVI6	J4I8V8	Uncharacterized protein.	Ras-GAP domain-containing protein.	0.823
FIBRA_07733	FIBRA_06346	J4GVI6	J4H411	Uncharacterized protein.	Uncharacterized protein.	0.762
FIBRA_07733	FIBRA_07268	J4GVI6	J4I0E5	Uncharacterized protein.	Uncharacterized protein.	0.999
FIBRA_07733	FIBRA_08708	J4GVI6	J4GXA5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.845
FIBRA_08708	FIBRA_02113	J4GXA5	J4I8V8	Protein kinase domain-containing protein.	Ras-GAP domain-containing protein.	0.650
FIBRA_08708	FIBRA_06346	J4GXA5	J4H411	Protein kinase domain-containing protein.	Uncharacterized protein.	0.731
FIBRA_08708	FIBRA_07268	J4GXA5	J4I0E5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.981
FIBRA_08708	FIBRA_07733	J4GXA5	J4GVI6	Protein kinase domain-containing protein.	Uncharacterized protein.	0.845