5 items (Fibroporia radiculosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_07434	Uncharacterized protein. (1090 aa)
	FIBRA_05883	NFACT-R_1 domain-containing protein. (290 aa)
	FIBRA_03447	Uncharacterized protein. (1054 aa)
	FIBRA_04608	Uncharacterized protein. (524 aa)
	FIBRA_00219	Uncharacterized protein. (331 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_00219	FIBRA_05883	J7RV67	J4HY94	Uncharacterized protein.	NFACT-R_1 domain-containing protein.	0.764
FIBRA_03447	FIBRA_05883	J4I9M0	J4HY94	Uncharacterized protein.	NFACT-R_1 domain-containing protein.	0.764
FIBRA_04608	FIBRA_05883	J4IA92	J4HY94	Uncharacterized protein.	NFACT-R_1 domain-containing protein.	0.764
FIBRA_05883	FIBRA_00219	J4HY94	J7RV67	NFACT-R_1 domain-containing protein.	Uncharacterized protein.	0.764
FIBRA_05883	FIBRA_03447	J4HY94	J4I9M0	NFACT-R_1 domain-containing protein.	Uncharacterized protein.	0.764
FIBRA_05883	FIBRA_04608	J4HY94	J4IA92	NFACT-R_1 domain-containing protein.	Uncharacterized protein.	0.764
FIBRA_05883	FIBRA_07434	J4HY94	J4H4M0	NFACT-R_1 domain-containing protein.	Uncharacterized protein.	0.764
FIBRA_07434	FIBRA_05883	J4H4M0	J4HY94	Uncharacterized protein.	NFACT-R_1 domain-containing protein.	0.764