12 items (Fibroporia radiculosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_01431	Spindle pole body component. (833 aa)
	FIBRA_00077	Spindle pole body component. (753 aa)
	FIBRA_00140	UBIQUITIN_CONJUGAT_2 domain-containing protein. (462 aa)
	FIBRA_08222	Serine/threonine-protein kinase. (823 aa)
	FIBRA_07886	Uncharacterized protein. (674 aa)
	FIBRA_03290	Protein kinase domain-containing protein. (532 aa)
	FIBRA_03808	Uncharacterized protein. (1159 aa)
	FIBRA_05673	Uncharacterized protein. (212 aa)
	FIBRA_05473	UBIQUITIN_CONJUGAT_2 domain-containing protein. (900 aa)
	FIBRA_05674	Uncharacterized protein. (291 aa)
	PAC1	Nuclear distribution protein PAC1; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs; Belongs to the WD repeat LIS1/nudF family. (439 aa)
	FIBRA_03297	Spindle pole body component. (858 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_00077	FIBRA_01431	J7SCF9	J4G0Z5	Spindle pole body component.	Spindle pole body component.	0.993
FIBRA_00077	FIBRA_03297	J7SCF9	J4G4X6	Spindle pole body component.	Spindle pole body component.	0.991
FIBRA_00077	FIBRA_03808	J7SCF9	J4HW69	Spindle pole body component.	Uncharacterized protein.	0.994
FIBRA_00140	FIBRA_05473	J7SBV3	J4H3I9	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.911
FIBRA_00140	FIBRA_07886	J7SBV3	J4IC22	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.612
FIBRA_00140	FIBRA_08222	J7SBV3	J4IC87	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Serine/threonine-protein kinase.	0.824
FIBRA_00140	PAC1	J7SBV3	J4GC08	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Nuclear distribution protein PAC1; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs; Belongs to the WD repeat LIS1/nudF family.	0.400
FIBRA_01431	FIBRA_00077	J4G0Z5	J7SCF9	Spindle pole body component.	Spindle pole body component.	0.993
FIBRA_01431	FIBRA_03297	J4G0Z5	J4G4X6	Spindle pole body component.	Spindle pole body component.	0.998
FIBRA_01431	FIBRA_03808	J4G0Z5	J4HW69	Spindle pole body component.	Uncharacterized protein.	0.992
FIBRA_03290	FIBRA_07886	J4I9I9	J4IC22	Protein kinase domain-containing protein.	Uncharacterized protein.	0.713
FIBRA_03297	FIBRA_00077	J4G4X6	J7SCF9	Spindle pole body component.	Spindle pole body component.	0.991
FIBRA_03297	FIBRA_01431	J4G4X6	J4G0Z5	Spindle pole body component.	Spindle pole body component.	0.998
FIBRA_03297	FIBRA_03808	J4G4X6	J4HW69	Spindle pole body component.	Uncharacterized protein.	0.990
FIBRA_03808	FIBRA_00077	J4HW69	J7SCF9	Uncharacterized protein.	Spindle pole body component.	0.994
FIBRA_03808	FIBRA_01431	J4HW69	J4G0Z5	Uncharacterized protein.	Spindle pole body component.	0.992
FIBRA_03808	FIBRA_03297	J4HW69	J4G4X6	Uncharacterized protein.	Spindle pole body component.	0.990
FIBRA_05473	FIBRA_00140	J4H3I9	J7SBV3	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.911
FIBRA_05473	FIBRA_07886	J4H3I9	J4IC22	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.612
FIBRA_05473	FIBRA_08222	J4H3I9	J4IC87	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Serine/threonine-protein kinase.	0.824