9 items (Fibroporia radiculosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_04839	Protein kinase domain-containing protein. (707 aa)
	FIBRA_05461	Protein kinase domain-containing protein. (444 aa)
	FIBRA_00915	Protein kinase domain-containing protein. (433 aa)
	FIBRA_03643	Protein kinase domain-containing protein. (881 aa)
	FIBRA_03379	Uncharacterized protein. (1717 aa)
	FIBRA_01700	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (368 aa)
	FIBRA_07321	Protein kinase domain-containing protein. (765 aa)
	FIBRA_02974	Protein kinase domain-containing protein. (423 aa)
	FIBRA_03351	Protein kinase domain-containing protein. (414 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_00915	FIBRA_03351	J4G0P2	J4HVY1	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.756
FIBRA_00915	FIBRA_03379	J4G0P2	J4GNG1	Protein kinase domain-containing protein.	Uncharacterized protein.	0.559
FIBRA_00915	FIBRA_04839	J4G0P2	J4HWR7	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.754
FIBRA_00915	FIBRA_05461	J4G0P2	J4HXK1	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.628
FIBRA_01700	FIBRA_03351	J4H1C9	J4HVY1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.948
FIBRA_01700	FIBRA_03643	J4H1C9	J4G636	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.864
FIBRA_01700	FIBRA_04839	J4H1C9	J4HWR7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.947
FIBRA_01700	FIBRA_07321	J4H1C9	J4H4J8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.866
FIBRA_02974	FIBRA_03351	J4HVQ6	J4HVY1	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.749
FIBRA_02974	FIBRA_03379	J4HVQ6	J4GNG1	Protein kinase domain-containing protein.	Uncharacterized protein.	0.559
FIBRA_02974	FIBRA_04839	J4HVQ6	J4HWR7	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.745
FIBRA_02974	FIBRA_05461	J4HVQ6	J4HXK1	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.697
FIBRA_03351	FIBRA_00915	J4HVY1	J4G0P2	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.756
FIBRA_03351	FIBRA_01700	J4HVY1	J4H1C9	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.948
FIBRA_03351	FIBRA_02974	J4HVY1	J4HVQ6	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.749
FIBRA_03351	FIBRA_03643	J4HVY1	J4G636	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.567
FIBRA_03351	FIBRA_05461	J4HVY1	J4HXK1	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.404
FIBRA_03351	FIBRA_07321	J4HVY1	J4H4J8	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.567
FIBRA_03379	FIBRA_00915	J4GNG1	J4G0P2	Uncharacterized protein.	Protein kinase domain-containing protein.	0.559
FIBRA_03379	FIBRA_02974	J4GNG1	J4HVQ6	Uncharacterized protein.	Protein kinase domain-containing protein.	0.559