22 items (Fibroporia radiculosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_08688	Uncharacterized protein. (787 aa)
	FIBRA_00222	PIG-P domain-containing protein. (164 aa)
	FIBRA_08506	GPI mannosyltransferase 2; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis. (417 aa)
	FIBRA_07545	Uncharacterized protein. (222 aa)
	FIBRA_01228	Uncharacterized protein. (313 aa)
	FIBRA_04159	Uncharacterized protein. (1294 aa)
	FIBRA_02908	Uncharacterized protein. (611 aa)
	FIBRA_06386	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family. (544 aa)
	FIBRA_04058	Uncharacterized protein. (302 aa)
	FIBRA_01527	Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins. (282 aa)
	FIBRA_00411	Uncharacterized protein. (360 aa)
	FIBRA_07998	Post-GPI attachment to proteins factor 3; Involved in the lipid remodeling steps of GPI-anchor maturation; Belongs to the PGAP3 family. (344 aa)
	FIBRA_06571	Uncharacterized protein. (519 aa)
	FIBRA_06461	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family. (417 aa)
	FIBRA_04048	Uncharacterized protein. (342 aa)
	FIBRA_01782	Uncharacterized protein. (552 aa)
	FIBRA_01280	Uncharacterized protein. (401 aa)
	FIBRA_00867	Uncharacterized protein. (1324 aa)
	FIBRA_08187	Uncharacterized protein. (964 aa)
	FIBRA_07852	Uncharacterized protein. (583 aa)
	FIBRA_03256	Uncharacterized protein. (463 aa)
	FIBRA_02039	Mannosyltransferase. (537 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_00222	FIBRA_00867	J7SCM0	J4GIT0	PIG-P domain-containing protein.	Uncharacterized protein.	0.499
FIBRA_00222	FIBRA_01228	J7SCM0	J4G0V5	PIG-P domain-containing protein.	Uncharacterized protein.	0.843
FIBRA_00222	FIBRA_01280	J7SCM0	J4GJR7	PIG-P domain-containing protein.	Uncharacterized protein.	0.425
FIBRA_00222	FIBRA_01527	J7SCM0	J4H181	PIG-P domain-containing protein.	Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.	0.433
FIBRA_00222	FIBRA_01782	J7SCM0	J4GLC2	PIG-P domain-containing protein.	Uncharacterized protein.	0.471
FIBRA_00222	FIBRA_02039	J7SCM0	J4G1B5	PIG-P domain-containing protein.	Mannosyltransferase.	0.509
FIBRA_00222	FIBRA_03256	J7SCM0	J4G4S1	PIG-P domain-containing protein.	Uncharacterized protein.	0.944
FIBRA_00222	FIBRA_04048	J7SCM0	J4GNW3	PIG-P domain-containing protein.	Uncharacterized protein.	0.884
FIBRA_00222	FIBRA_04159	J7SCM0	J4HWD7	PIG-P domain-containing protein.	Uncharacterized protein.	0.467
FIBRA_00222	FIBRA_06461	J7SCM0	J4GSS4	PIG-P domain-containing protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.465
FIBRA_00222	FIBRA_07852	J7SCM0	J4GFQ6	PIG-P domain-containing protein.	Uncharacterized protein.	0.864
FIBRA_00222	FIBRA_08187	J7SCM0	J4GGR7	PIG-P domain-containing protein.	Uncharacterized protein.	0.407
FIBRA_00222	FIBRA_08506	J7SCM0	J4ICE2	PIG-P domain-containing protein.	GPI mannosyltransferase 2; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis.	0.510
FIBRA_00411	FIBRA_00867	J4GZY4	J4GIT0	Uncharacterized protein.	Uncharacterized protein.	0.536
FIBRA_00411	FIBRA_01228	J4GZY4	J4G0V5	Uncharacterized protein.	Uncharacterized protein.	0.470
FIBRA_00411	FIBRA_01280	J4GZY4	J4GJR7	Uncharacterized protein.	Uncharacterized protein.	0.628
FIBRA_00411	FIBRA_01527	J4GZY4	J4H181	Uncharacterized protein.	Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.	0.415
FIBRA_00411	FIBRA_01782	J4GZY4	J4GLC2	Uncharacterized protein.	Uncharacterized protein.	0.835
FIBRA_00411	FIBRA_02039	J4GZY4	J4G1B5	Uncharacterized protein.	Mannosyltransferase.	0.743
FIBRA_00411	FIBRA_03256	J4GZY4	J4G4S1	Uncharacterized protein.	Uncharacterized protein.	0.528