11 items (Fibroporia radiculosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_02018	Uncharacterized protein. (198 aa)
	FIBRA_06785	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1212 aa)
	FIBRA_08016	Uncharacterized protein. (191 aa)
	FIBRA_02017	BAH domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (671 aa)
	FIBRA_07104	Uncharacterized protein. (620 aa)
	FIBRA_04044	Uncharacterized protein. (1144 aa)
	FIBRA_03961	Uncharacterized protein. (647 aa)
	FIBRA_05061	UBP-type domain-containing protein. (633 aa)
	FIBRA_05830	Adenylyl cyclase-associated protein; Belongs to the CAP family. (515 aa)
	FIBRA_07039	Uncharacterized protein. (201 aa)
	FIBRA_00253	Uncharacterized protein. (548 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_03961	FIBRA_04044	J4GNU6	J4I9Y5	Uncharacterized protein.	Uncharacterized protein.	0.535
FIBRA_03961	FIBRA_08016	J4GNU6	J4GG74	Uncharacterized protein.	Uncharacterized protein.	0.853
FIBRA_04044	FIBRA_03961	J4I9Y5	J4GNU6	Uncharacterized protein.	Uncharacterized protein.	0.535
FIBRA_04044	FIBRA_07104	J4I9Y5	J4I062	Uncharacterized protein.	Uncharacterized protein.	0.535
FIBRA_04044	FIBRA_08016	J4I9Y5	J4GG74	Uncharacterized protein.	Uncharacterized protein.	0.772
FIBRA_05061	FIBRA_08016	J4IAI0	J4GG74	UBP-type domain-containing protein.	Uncharacterized protein.	0.576
FIBRA_07039	FIBRA_08016	J4IBL0	J4GG74	Uncharacterized protein.	Uncharacterized protein.	0.979
FIBRA_07104	FIBRA_04044	J4I062	J4I9Y5	Uncharacterized protein.	Uncharacterized protein.	0.535
FIBRA_07104	FIBRA_08016	J4I062	J4GG74	Uncharacterized protein.	Uncharacterized protein.	0.853
FIBRA_08016	FIBRA_03961	J4GG74	J4GNU6	Uncharacterized protein.	Uncharacterized protein.	0.853
FIBRA_08016	FIBRA_04044	J4GG74	J4I9Y5	Uncharacterized protein.	Uncharacterized protein.	0.772
FIBRA_08016	FIBRA_05061	J4GG74	J4IAI0	Uncharacterized protein.	UBP-type domain-containing protein.	0.576
FIBRA_08016	FIBRA_07039	J4GG74	J4IBL0	Uncharacterized protein.	Uncharacterized protein.	0.979
FIBRA_08016	FIBRA_07104	J4GG74	J4I062	Uncharacterized protein.	Uncharacterized protein.	0.853