5 items (Fibroporia radiculosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_06571	Uncharacterized protein. (519 aa)
	FIBRA_06461	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family. (417 aa)
	FIBRA_01280	Uncharacterized protein. (401 aa)
	FIBRA_01782	Uncharacterized protein. (552 aa)
	FIBRA_04159	Uncharacterized protein. (1294 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_01280	FIBRA_01782	J4GJR7	J4GLC2	Uncharacterized protein.	Uncharacterized protein.	0.991
FIBRA_01280	FIBRA_04159	J4GJR7	J4HWD7	Uncharacterized protein.	Uncharacterized protein.	0.992
FIBRA_01280	FIBRA_06461	J4GJR7	J4GSS4	Uncharacterized protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.994
FIBRA_01280	FIBRA_06571	J4GJR7	J4GT01	Uncharacterized protein.	Uncharacterized protein.	0.992
FIBRA_01782	FIBRA_01280	J4GLC2	J4GJR7	Uncharacterized protein.	Uncharacterized protein.	0.991
FIBRA_01782	FIBRA_04159	J4GLC2	J4HWD7	Uncharacterized protein.	Uncharacterized protein.	0.998
FIBRA_01782	FIBRA_06461	J4GLC2	J4GSS4	Uncharacterized protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.998
FIBRA_01782	FIBRA_06571	J4GLC2	J4GT01	Uncharacterized protein.	Uncharacterized protein.	0.998
FIBRA_04159	FIBRA_01280	J4HWD7	J4GJR7	Uncharacterized protein.	Uncharacterized protein.	0.992
FIBRA_04159	FIBRA_01782	J4HWD7	J4GLC2	Uncharacterized protein.	Uncharacterized protein.	0.998
FIBRA_04159	FIBRA_06461	J4HWD7	J4GSS4	Uncharacterized protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.998
FIBRA_04159	FIBRA_06571	J4HWD7	J4GT01	Uncharacterized protein.	Uncharacterized protein.	0.998
FIBRA_06461	FIBRA_01280	J4GSS4	J4GJR7	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Uncharacterized protein.	0.994
FIBRA_06461	FIBRA_01782	J4GSS4	J4GLC2	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Uncharacterized protein.	0.998
FIBRA_06461	FIBRA_04159	J4GSS4	J4HWD7	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Uncharacterized protein.	0.998
FIBRA_06461	FIBRA_06571	J4GSS4	J4GT01	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Uncharacterized protein.	0.998
FIBRA_06571	FIBRA_01280	J4GT01	J4GJR7	Uncharacterized protein.	Uncharacterized protein.	0.992
FIBRA_06571	FIBRA_01782	J4GT01	J4GLC2	Uncharacterized protein.	Uncharacterized protein.	0.998
FIBRA_06571	FIBRA_04159	J4GT01	J4HWD7	Uncharacterized protein.	Uncharacterized protein.	0.998
FIBRA_06571	FIBRA_06461	J4GT01	J4GSS4	Uncharacterized protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.998