56 items (Fibroporia radiculosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_02928	Uncharacterized protein. (187 aa)
	FIBRA_00132	Rab-GAP TBC domain-containing protein. (720 aa)
	FIBRA_00140	UBIQUITIN_CONJUGAT_2 domain-containing protein. (462 aa)
	FIBRA_00070	PA28_beta domain-containing protein. (252 aa)
	FIBRA_00076	Rab-GAP TBC domain-containing protein. (638 aa)
	FIBRA_08788	Uncharacterized protein. (1225 aa)
	FIBRA_06747	Uncharacterized protein. (1808 aa)
	FIBRA_04193	Rap-GAP domain-containing protein. (1737 aa)
	FIBRA_04044	Uncharacterized protein. (1144 aa)
	FIBRA_03697	BLM10_mid domain-containing protein. (505 aa)
	FIBRA_02446	Rho-GAP domain-containing protein. (1571 aa)
	FIBRA_02381	Rho-GAP domain-containing protein. (845 aa)
	FIBRA_02209	Uncharacterized protein. (309 aa)
	FIBRA_02113	Ras-GAP domain-containing protein. (405 aa)
	FIBRA_08255	Uncharacterized protein. (557 aa)
	FIBRA_07526	Uncharacterized protein. (209 aa)
	FIBRA_07104	Uncharacterized protein. (620 aa)
	FIBRA_06379	Rab-GAP TBC domain-containing protein. (1208 aa)
	FIBRA_05294	Multifunctional fusion protein; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (507 aa)
	FIBRA_04650	Uncharacterized protein. (1453 aa)
	FIBRA_03703	Uncharacterized protein. (2475 aa)
	FIBRA_02114	Ras-GAP domain-containing protein. (775 aa)
	FIBRA_01162	Uncharacterized protein. (763 aa)
	FIBRA_06346	Uncharacterized protein. (667 aa)
	FIBRA_05633	RPN13_C domain-containing protein. (119 aa)
	FIBRA_05473	UBIQUITIN_CONJUGAT_2 domain-containing protein. (900 aa)
	FIBRA_04915	Uncharacterized protein. (369 aa)
	FIBRA_04905	PH_8 domain-containing protein. (750 aa)
	FIBRA_04405	Ras-GAP domain-containing protein. (2489 aa)
	FIBRA_03705	Uncharacterized protein. (348 aa)
	FIBRA_02513	Rab-GAP TBC domain-containing protein. (316 aa)
	FIBRA_01432	Ras-GAP domain-containing protein. (1854 aa)
	FIBRA_00865	Uncharacterized protein. (386 aa)
	FIBRA_00441	Rab-GAP TBC domain-containing protein. (1285 aa)
	FIBRA_07404	UBIQUITIN_CONJUGAT_2 domain-containing protein. (946 aa)
	FIBRA_07242	Rab-GAP TBC domain-containing protein. (802 aa)
	FIBRA_07028	Uncharacterized protein. (344 aa)
	FIBRA_06387	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (284 aa)
	FIBRA_04003	Rab-GAP TBC domain-containing protein. (543 aa)
	FIBRA_03961	Uncharacterized protein. (647 aa)
	FIBRA_03696	Uncharacterized protein. (2146 aa)
	FIBRA_00968	Uncharacterized protein. (965 aa)
	FIBRA_08636	Uncharacterized protein. (553 aa)
	FIBRA_08047	Protein kinase domain-containing protein. (1138 aa)
	FIBRA_07955	Uncharacterized protein. (210 aa)
	FIBRA_06638	Uncharacterized protein; Belongs to the peptidase M16 family. (524 aa)
	FIBRA_05632	Uncharacterized protein. (153 aa)
	FIBRA_05617	Uncharacterized protein. (1589 aa)
	FIBRA_04886	Uncharacterized protein. (167 aa)
	FIBRA_04706	Uncharacterized protein. (973 aa)
	FIBRA_03704	Uncharacterized protein. (469 aa)
	FIBRA_02460	Uncharacterized protein. (250 aa)
	FIBRA_02313	Uncharacterized protein. (117 aa)
	FIBRA_01436	Uncharacterized protein. (812 aa)
	FIBRA_01218	Uncharacterized protein. (152 aa)
	FIBRA_00945	Uncharacterized protein. (241 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_00070	FIBRA_00140	J7SBS3	J7SBV3	PA28_beta domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.699
FIBRA_00070	FIBRA_01218	J7SBS3	J4G0V3	PA28_beta domain-containing protein.	Uncharacterized protein.	0.617
FIBRA_00070	FIBRA_02313	J7SBS3	J4G1K9	PA28_beta domain-containing protein.	Uncharacterized protein.	0.530
FIBRA_00070	FIBRA_05473	J7SBS3	J4H3I9	PA28_beta domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.699
FIBRA_00070	FIBRA_05632	J7SBS3	J4G9U7	PA28_beta domain-containing protein.	Uncharacterized protein.	0.805
FIBRA_00070	FIBRA_05633	J7SBS3	J4H3M4	PA28_beta domain-containing protein.	RPN13_C domain-containing protein.	0.805
FIBRA_00070	FIBRA_07028	J7SBS3	J4GU64	PA28_beta domain-containing protein.	Uncharacterized protein.	0.733
FIBRA_00070	FIBRA_07404	J7SBS3	J4GUX2	PA28_beta domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.510
FIBRA_00076	FIBRA_00945	J7RG43	J4G0P8	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.580
FIBRA_00132	FIBRA_04003	J7SCH5	J4GNV4	Rab-GAP TBC domain-containing protein.	Rab-GAP TBC domain-containing protein.	0.453
FIBRA_00132	FIBRA_08255	J7SCH5	J4I2F6	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.400
FIBRA_00140	FIBRA_00070	J7SBV3	J7SBS3	UBIQUITIN_CONJUGAT_2 domain-containing protein.	PA28_beta domain-containing protein.	0.699
FIBRA_00140	FIBRA_00865	J7SBV3	J4H0S5	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.991
FIBRA_00140	FIBRA_01218	J7SBV3	J4G0V3	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.667
FIBRA_00140	FIBRA_02313	J7SBV3	J4G1K9	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.569
FIBRA_00140	FIBRA_04405	J7SBV3	J4H2Y1	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ras-GAP domain-containing protein.	0.774
FIBRA_00140	FIBRA_05473	J7SBV3	J4H3I9	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.911
FIBRA_00140	FIBRA_07028	J7SBV3	J4GU64	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.667
FIBRA_00140	FIBRA_07404	J7SBV3	J4GUX2	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.569
FIBRA_00140	FIBRA_08047	J7SBV3	J4GGA7	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Protein kinase domain-containing protein.	0.845