13 items (Fibroporia radiculosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_03449	Uncharacterized protein. (1136 aa)
	FIBRA_01628	BUB1 N-terminal domain-containing protein. (456 aa)
	FIBRA_02359	Spc7 domain-containing protein. (1366 aa)
	FIBRA_04643	Dsl1_C domain-containing protein. (920 aa)
	FIBRA_07808	Uncharacterized protein. (649 aa)
	FIBRA_02513	Rab-GAP TBC domain-containing protein. (316 aa)
	FIBRA_03950	Protein kinase domain-containing protein. (1201 aa)
	FIBRA_07342	C2H2-type domain-containing protein. (418 aa)
	FIBRA_08090	WD_REPEATS_REGION domain-containing protein. (299 aa)
	FIBRA_08821	Uncharacterized protein. (543 aa)
	FIBRA_04054	Uncharacterized protein. (605 aa)
	FIBRA_07410	HORMA domain-containing protein. (209 aa)
	FIBRA_02236	Uncharacterized protein. (677 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_01628	FIBRA_02236	J4GKU2	J4G1F8	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.969
FIBRA_01628	FIBRA_02359	J4GKU2	J4H1T4	BUB1 N-terminal domain-containing protein.	Spc7 domain-containing protein.	0.875
FIBRA_01628	FIBRA_02513	J4GKU2	J4H1W4	BUB1 N-terminal domain-containing protein.	Rab-GAP TBC domain-containing protein.	0.419
FIBRA_01628	FIBRA_04054	J4GKU2	J4I9Y7	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.599
FIBRA_01628	FIBRA_04643	J4GKU2	J4IA99	BUB1 N-terminal domain-containing protein.	Dsl1_C domain-containing protein.	0.775
FIBRA_01628	FIBRA_07342	J4GKU2	J4H4K2	BUB1 N-terminal domain-containing protein.	C2H2-type domain-containing protein.	0.579
FIBRA_01628	FIBRA_07410	J4GKU2	J4IBT1	BUB1 N-terminal domain-containing protein.	HORMA domain-containing protein.	0.991
FIBRA_01628	FIBRA_08090	J4GKU2	J4H4Z6	BUB1 N-terminal domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.973
FIBRA_02236	FIBRA_01628	J4G1F8	J4GKU2	Uncharacterized protein.	BUB1 N-terminal domain-containing protein.	0.969
FIBRA_02236	FIBRA_02513	J4G1F8	J4H1W4	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.462
FIBRA_02236	FIBRA_03449	J4G1F8	J4G5J4	Uncharacterized protein.	Uncharacterized protein.	0.969
FIBRA_02236	FIBRA_03950	J4G1F8	J4H2P4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.754
FIBRA_02236	FIBRA_04643	J4G1F8	J4IA99	Uncharacterized protein.	Dsl1_C domain-containing protein.	0.765
FIBRA_02236	FIBRA_07410	J4G1F8	J4IBT1	Uncharacterized protein.	HORMA domain-containing protein.	0.997
FIBRA_02236	FIBRA_07808	J4G1F8	J4IC07	Uncharacterized protein.	Uncharacterized protein.	0.737
FIBRA_02236	FIBRA_08090	J4G1F8	J4H4Z6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.942
FIBRA_02359	FIBRA_01628	J4H1T4	J4GKU2	Spc7 domain-containing protein.	BUB1 N-terminal domain-containing protein.	0.875
FIBRA_02359	FIBRA_03449	J4H1T4	J4G5J4	Spc7 domain-containing protein.	Uncharacterized protein.	0.875
FIBRA_02359	FIBRA_03950	J4H1T4	J4H2P4	Spc7 domain-containing protein.	Protein kinase domain-containing protein.	0.601
FIBRA_02359	FIBRA_07410	J4H1T4	J4IBT1	Spc7 domain-containing protein.	HORMA domain-containing protein.	0.713