21 items (Fibroporia radiculosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_03474	Uncharacterized protein. (209 aa)
	FIBRA_04789	Uncharacterized protein. (157 aa)
	FIBRA_04876	Uncharacterized protein. (165 aa)
	FIBRA_05699	Uncharacterized protein. (673 aa)
	FIBRA_07428	DUF4203 domain-containing protein. (422 aa)
	FIBRA_08822	Uncharacterized protein. (220 aa)
	FIBRA_04523	Uncharacterized protein; Belongs to the calmodulin family. (149 aa)
	FIBRA_07967	Uncharacterized protein; Belongs to the syntaxin family. (1827 aa)
	FIBRA_08633	Peptidase C50 domain-containing protein. (978 aa)
	FIBRA_01002	Uncharacterized protein. (1072 aa)
	FIBRA_02513	Rab-GAP TBC domain-containing protein. (316 aa)
	FIBRA_05998	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (454 aa)
	FIBRA_06939	Uncharacterized protein. (275 aa)
	FIBRA_01941	Uncharacterized protein. (329 aa)
	FIBRA_02168	Cnn_1N domain-containing protein. (1064 aa)
	FIBRA_03884	Uncharacterized protein. (1817 aa)
	FIBRA_04802	Uncharacterized protein. (86 aa)
	FIBRA_05394	DUF155 domain-containing protein. (545 aa)
	FIBRA_00253	Uncharacterized protein. (548 aa)
	FIBRA_00352	Uncharacterized protein. (136 aa)
	FIBRA_01001	Uncharacterized protein. (875 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_00253	FIBRA_02513	J7S5W0	J4H1W4	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.433
FIBRA_00253	FIBRA_08822	J7S5W0	J4GIB5	Uncharacterized protein.	Uncharacterized protein.	0.526
FIBRA_01001	FIBRA_01002	J4G0Q9	J4H0V2	Uncharacterized protein.	Uncharacterized protein.	0.619
FIBRA_01001	FIBRA_02513	J4G0Q9	J4H1W4	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.964
FIBRA_01001	FIBRA_03884	J4G0Q9	J4I9V4	Uncharacterized protein.	Uncharacterized protein.	0.422
FIBRA_01001	FIBRA_07967	J4G0Q9	J4GVX9	Uncharacterized protein.	Uncharacterized protein; Belongs to the syntaxin family.	0.422
FIBRA_01001	FIBRA_08822	J4G0Q9	J4GIB5	Uncharacterized protein.	Uncharacterized protein.	0.950
FIBRA_01002	FIBRA_01001	J4H0V2	J4G0Q9	Uncharacterized protein.	Uncharacterized protein.	0.619
FIBRA_01002	FIBRA_02513	J4H0V2	J4H1W4	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.981
FIBRA_01002	FIBRA_08822	J4H0V2	J4GIB5	Uncharacterized protein.	Uncharacterized protein.	0.978
FIBRA_02168	FIBRA_03474	J4I8W9	J4G5L5	Cnn_1N domain-containing protein.	Uncharacterized protein.	0.439
FIBRA_02168	FIBRA_04523	J4I8W9	J4GPE1	Cnn_1N domain-containing protein.	Uncharacterized protein; Belongs to the calmodulin family.	0.577
FIBRA_02168	FIBRA_04789	J4I8W9	J4G7Y6	Cnn_1N domain-containing protein.	Uncharacterized protein.	0.577
FIBRA_02168	FIBRA_04802	J4I8W9	J4IAD0	Cnn_1N domain-containing protein.	Uncharacterized protein.	0.577
FIBRA_02168	FIBRA_04876	J4I8W9	J4G837	Cnn_1N domain-containing protein.	Uncharacterized protein.	0.516
FIBRA_02168	FIBRA_05699	J4I8W9	J4G9Y5	Cnn_1N domain-containing protein.	Uncharacterized protein.	0.439
FIBRA_02168	FIBRA_05998	J4I8W9	J4H3U4	Cnn_1N domain-containing protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.422
FIBRA_02168	FIBRA_08633	J4I8W9	J4GX56	Cnn_1N domain-containing protein.	Peptidase C50 domain-containing protein.	0.751
FIBRA_02168	FIBRA_08822	J4I8W9	J4GIB5	Cnn_1N domain-containing protein.	Uncharacterized protein.	0.536
FIBRA_02513	FIBRA_00253	J4H1W4	J7S5W0	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.433