(30 nodes) Pyridoxal phosphate-dependent transferase, small domain network (Fibroporia radiculosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_07009	Uncharacterized protein. (401 aa)
	FIBRA_02396	Aminotran_5 domain-containing protein. (375 aa)
	FIBRA_01115	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (442 aa)
	FIBRA_07598	Aminotran_1_2 domain-containing protein. (483 aa)
	FIBRA_07165	Uncharacterized protein. (618 aa)
	FIBRA_07025	Aminotran_1_2 domain-containing protein. (450 aa)
	FIBRA_03230	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (478 aa)
	FIBRA_07986	Aminotran_5 domain-containing protein. (633 aa)
	FIBRA_07843	Uncharacterized protein. (497 aa)
	FIBRA_07700	Aminotran_1_2 domain-containing protein. (539 aa)
	FIBRA_07610	Uncharacterized protein. (670 aa)
	FIBRA_06331	Uncharacterized protein. (390 aa)
	FIBRA_04921	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (495 aa)
	FIBRA_04517	Aminotran_5 domain-containing protein. (404 aa)
	FIBRA_02222	Uncharacterized protein. (434 aa)
	FIBRA_01806	Uncharacterized protein. (432 aa)
	FIBRA_08471	Uncharacterized protein. (163 aa)
	FIBRA_07487	Uncharacterized protein. (450 aa)
	FIBRA_06897	Uncharacterized protein. (464 aa)
	FIBRA_00778	Aminotran_1_2 domain-containing protein. (522 aa)
	FIBRA_02768	Aminotran_1_2 domain-containing protein. (414 aa)
	FIBRA_04016	Aspartate aminotransferase. (423 aa)
	FIBRA_04273	Beta_elim_lyase domain-containing protein. (406 aa)
	FIBRA_05254	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine. (1010 aa)
	FIBRA_05327	Uncharacterized protein. (556 aa)
	FIBRA_08435	Uncharacterized protein. (182 aa)
	FIBRA_08441	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (477 aa)
	FIBRA_02740	Ornithine aminotransferase. (578 aa)
	FIBRA_04922	Aminotran_1_2 domain-containing protein. (674 aa)
	FIBRA_08298	Aminotran_5 domain-containing protein. (428 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_00778	FIBRA_01115	J4G0L5	J4I8B1	Aminotran_1_2 domain-containing protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.611
FIBRA_00778	FIBRA_02396	J4G0L5	J4I914	Aminotran_1_2 domain-containing protein.	Aminotran_5 domain-containing protein.	0.795
FIBRA_00778	FIBRA_03230	J4G0L5	J4HVV7	Aminotran_1_2 domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.814
FIBRA_00778	FIBRA_04273	J4G0L5	J4G743	Aminotran_1_2 domain-containing protein.	Beta_elim_lyase domain-containing protein.	0.823
FIBRA_00778	FIBRA_04921	J4G0L5	J4H380	Aminotran_1_2 domain-containing protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.611
FIBRA_00778	FIBRA_04922	J4G0L5	J4GQ27	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.759
FIBRA_00778	FIBRA_05254	J4G0L5	J4G8X2	Aminotran_1_2 domain-containing protein.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.798
FIBRA_00778	FIBRA_07598	J4G0L5	J4I0Z6	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.739
FIBRA_00778	FIBRA_07610	J4G0L5	J4H4Q4	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.759
FIBRA_00778	FIBRA_08441	J4G0L5	J4GHE9	Aminotran_1_2 domain-containing protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.769
FIBRA_01115	FIBRA_00778	J4I8B1	J4G0L5	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aminotran_1_2 domain-containing protein.	0.611
FIBRA_01115	FIBRA_04922	J4I8B1	J4GQ27	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aminotran_1_2 domain-containing protein.	0.564
FIBRA_01115	FIBRA_05327	J4I8B1	J4G940	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.488
FIBRA_01115	FIBRA_07610	J4I8B1	J4H4Q4	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.559
FIBRA_01115	FIBRA_08441	J4I8B1	J4GHE9	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.630
FIBRA_01806	FIBRA_02222	J4H1F7	J4H1Q7	Uncharacterized protein.	Uncharacterized protein.	0.706
FIBRA_01806	FIBRA_02396	J4H1F7	J4I914	Uncharacterized protein.	Aminotran_5 domain-containing protein.	0.503
FIBRA_01806	FIBRA_03230	J4H1F7	J4HVV7	Uncharacterized protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.503
FIBRA_01806	FIBRA_04016	J4H1F7	J4G6Q5	Uncharacterized protein.	Aspartate aminotransferase.	0.763
FIBRA_01806	FIBRA_06331	J4H1F7	J4H408	Uncharacterized protein.	Uncharacterized protein.	0.731