(28 nodes) SH3-like domain superfamily network (Fibroporia radiculosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_03899	Uncharacterized protein. (878 aa)
	FIBRA_01183	Uncharacterized protein. (676 aa)
	FIBRA_05617	Uncharacterized protein. (1589 aa)
	FIBRA_06091	SH3 domain-containing protein. (561 aa)
	FIBRA_06134	SH3 domain-containing protein. (1166 aa)
	FIBRA_07764	Uncharacterized protein. (1334 aa)
	FIBRA_08936	Uncharacterized protein. (46 aa)
	FIBRA_01691	Uncharacterized protein. (676 aa)
	FIBRA_03476	Uncharacterized protein. (415 aa)
	FIBRA_05225	Uncharacterized protein. (296 aa)
	FIBRA_05819	Uncharacterized protein. (198 aa)
	FIBRA_06337	SH3 domain-containing protein. (246 aa)
	FIBRA_08905	SH3 domain-containing protein. (403 aa)
	FIBRA_06203	Uncharacterized protein. (402 aa)
	FIBRA_07146	SH3 domain-containing protein. (300 aa)
	FIBRA_01282	Uncharacterized protein. (1305 aa)
	FIBRA_05227	Uncharacterized protein. (285 aa)
	FIBRA_03274	SH3 domain-containing protein. (526 aa)
	FIBRA_03745	Uncharacterized protein. (681 aa)
	FIBRA_03962	Uncharacterized protein. (555 aa)
	FIBRA_05954	SH3 domain-containing protein. (476 aa)
	FIBRA_06646	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1431 aa)
	FIBRA_06747	Uncharacterized protein. (1808 aa)
	FIBRA_07103	SH3 domain-containing protein. (573 aa)
	FIBRA_07963	SH3 domain-containing protein. (419 aa)
	FIBRA_08175	Uncharacterized protein. (673 aa)
	FIBRA_09381	SH3 domain-containing protein. (241 aa)
	FIBRA_00087	SH3 domain-containing protein; Plasma membrane osmosensor that activates the high osmolarity glycerol (HOG) MAPK signaling pathway in response to high osmolarity. (326 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_00087	FIBRA_03745	J7SCG2	J4I9S7	SH3 domain-containing protein; Plasma membrane osmosensor that activates the high osmolarity glycerol (HOG) MAPK signaling pathway in response to high osmolarity.	Uncharacterized protein.	0.664
FIBRA_00087	FIBRA_06091	J7SCG2	J4GAN0	SH3 domain-containing protein; Plasma membrane osmosensor that activates the high osmolarity glycerol (HOG) MAPK signaling pathway in response to high osmolarity.	SH3 domain-containing protein.	0.412
FIBRA_00087	FIBRA_07764	J7SCG2	J4GFH3	SH3 domain-containing protein; Plasma membrane osmosensor that activates the high osmolarity glycerol (HOG) MAPK signaling pathway in response to high osmolarity.	Uncharacterized protein.	0.792
FIBRA_00087	FIBRA_08175	J7SCG2	J4IC78	SH3 domain-containing protein; Plasma membrane osmosensor that activates the high osmolarity glycerol (HOG) MAPK signaling pathway in response to high osmolarity.	Uncharacterized protein.	0.532
FIBRA_01183	FIBRA_01282	J4G0U6	J4HT24	Uncharacterized protein.	Uncharacterized protein.	0.480
FIBRA_01183	FIBRA_07764	J4G0U6	J4GFH3	Uncharacterized protein.	Uncharacterized protein.	0.758
FIBRA_01282	FIBRA_01183	J4HT24	J4G0U6	Uncharacterized protein.	Uncharacterized protein.	0.480
FIBRA_03476	FIBRA_03962	J4GNI0	J4I9W9	Uncharacterized protein.	Uncharacterized protein.	0.498
FIBRA_03476	FIBRA_06091	J4GNI0	J4GAN0	Uncharacterized protein.	SH3 domain-containing protein.	0.793
FIBRA_03476	FIBRA_06646	J4GNI0	J4IBD4	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.808
FIBRA_03476	FIBRA_07103	J4GNI0	J4IBM2	Uncharacterized protein.	SH3 domain-containing protein.	0.498
FIBRA_03476	FIBRA_08175	J4GNI0	J4IC78	Uncharacterized protein.	Uncharacterized protein.	0.555
FIBRA_03476	FIBRA_09381	J4GNI0	J7S6E1	Uncharacterized protein.	SH3 domain-containing protein.	0.498
FIBRA_03745	FIBRA_00087	J4I9S7	J7SCG2	Uncharacterized protein.	SH3 domain-containing protein; Plasma membrane osmosensor that activates the high osmolarity glycerol (HOG) MAPK signaling pathway in response to high osmolarity.	0.664
FIBRA_03745	FIBRA_03899	J4I9S7	J4I9V7	Uncharacterized protein.	Uncharacterized protein.	0.733
FIBRA_03745	FIBRA_06337	J4I9S7	J4GSK1	Uncharacterized protein.	SH3 domain-containing protein.	0.664
FIBRA_03745	FIBRA_07764	J4I9S7	J4GFH3	Uncharacterized protein.	Uncharacterized protein.	0.660
FIBRA_03745	FIBRA_08175	J4I9S7	J4IC78	Uncharacterized protein.	Uncharacterized protein.	0.490
FIBRA_03899	FIBRA_03745	J4I9V7	J4I9S7	Uncharacterized protein.	Uncharacterized protein.	0.733
FIBRA_03899	FIBRA_07764	J4I9V7	J4GFH3	Uncharacterized protein.	Uncharacterized protein.	0.839