26 items (Fibroporia radiculosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_03876	PX domain-containing protein. (666 aa)
	FIBRA_04706	Uncharacterized protein. (973 aa)
	FIBRA_05854	VHS domain-containing protein. (161 aa)
	FIBRA_06002	SEC7 domain-containing protein. (1463 aa)
	FIBRA_07423	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (267 aa)
	FIBRA_08689	Adaptin_N domain-containing protein. (787 aa)
	FIBRA_01528	Uncharacterized protein; Belongs to the synaptobrevin family. (254 aa)
	FIBRA_02514	Adaptin_N domain-containing protein. (779 aa)
	FIBRA_06434	Glyco_transf_20 domain-containing protein. (565 aa)
	FIBRA_07601	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs; Belongs to the dus family. Dus3 subfamily. (1037 aa)
	FIBRA_07802	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	FIBRA_07813	Uncharacterized protein. (348 aa)
	FIBRA_08531	AP-1 complex subunit gamma. (788 aa)
	FIBRA_02502	UBA domain-containing protein. (899 aa)
	FIBRA_05306	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (140 aa)
	FIBRA_05855	Uncharacterized protein. (454 aa)
	FIBRA_02139	Protein YIP. (277 aa)
	FIBRA_02417	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1687 aa)
	FIBRA_03688	Clat_adaptor_s domain-containing protein. (806 aa)
	FIBRA_04462	PUM-HD domain-containing protein. (845 aa)
	FIBRA_04924	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (187 aa)
	FIBRA_08068	Glyco_transf_20 domain-containing protein. (814 aa)
	FIBRA_08558	Glyco_transf_20 domain-containing protein. (823 aa)
	FIBRA_03504	PUM-HD domain-containing protein. (659 aa)
	FIBRA_07814	Sortilin. (1095 aa)
	FIBRA_09015	Uncharacterized protein. (238 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_01528	FIBRA_02417	J4GKH9	J4HUX3	Uncharacterized protein; Belongs to the synaptobrevin family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.707
FIBRA_01528	FIBRA_02514	J4GKH9	J4GMX7	Uncharacterized protein; Belongs to the synaptobrevin family.	Adaptin_N domain-containing protein.	0.726
FIBRA_01528	FIBRA_03876	J4GKH9	J4G6H1	Uncharacterized protein; Belongs to the synaptobrevin family.	PX domain-containing protein.	0.661
FIBRA_01528	FIBRA_04924	J4GKH9	J4HWT3	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.723
FIBRA_01528	FIBRA_05306	J4GKH9	J4H3F5	Uncharacterized protein; Belongs to the synaptobrevin family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.646
FIBRA_01528	FIBRA_05854	J4GKH9	J4GA81	Uncharacterized protein; Belongs to the synaptobrevin family.	VHS domain-containing protein.	0.636
FIBRA_01528	FIBRA_05855	J4GKH9	J4H3R6	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.636
FIBRA_01528	FIBRA_07423	J4GKH9	J4GEE1	Uncharacterized protein; Belongs to the synaptobrevin family.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.682
FIBRA_01528	FIBRA_07601	J4GKH9	J4GVB5	Uncharacterized protein; Belongs to the synaptobrevin family.	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs; Belongs to the dus family. Dus3 subfamily.	0.651
FIBRA_01528	FIBRA_07802	J4GKH9	J4GVM4	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.723
FIBRA_01528	FIBRA_08531	J4GKH9	J4GWZ3	Uncharacterized protein; Belongs to the synaptobrevin family.	AP-1 complex subunit gamma.	0.728
FIBRA_01528	FIBRA_08689	J4GKH9	J4GI24	Uncharacterized protein; Belongs to the synaptobrevin family.	Adaptin_N domain-containing protein.	0.724
FIBRA_01528	FIBRA_09015	J4GKH9	J4ICN5	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.671
FIBRA_02139	FIBRA_03876	J4HUF2	J4G6H1	Protein YIP.	PX domain-containing protein.	0.593
FIBRA_02139	FIBRA_04924	J4HUF2	J4HWT3	Protein YIP.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.527
FIBRA_02139	FIBRA_07601	J4HUF2	J4GVB5	Protein YIP.	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs; Belongs to the dus family. Dus3 subfamily.	0.544
FIBRA_02139	FIBRA_07802	J4HUF2	J4GVM4	Protein YIP.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.527
FIBRA_02417	FIBRA_01528	J4HUX3	J4GKH9	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.707
FIBRA_02417	FIBRA_02502	J4HUX3	J4H1W2	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	UBA domain-containing protein.	0.997
FIBRA_02417	FIBRA_02514	J4HUX3	J4GMX7	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Adaptin_N domain-containing protein.	0.928