20 items (Fibroporia radiculosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_07802	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	FIBRA_02465	Uncharacterized protein. (805 aa)
	FIBRA_02980	Uncharacterized protein. (764 aa)
	FIBRA_04262	t-SNARE coiled-coil homology domain-containing protein. (141 aa)
	FIBRA_06364	t-SNARE coiled-coil homology domain-containing protein. (343 aa)
	FIBRA_00685	Uncharacterized protein. (924 aa)
	FIBRA_06940	Uncharacterized protein. (448 aa)
	FIBRA_08327	Cog4 domain-containing protein. (766 aa)
	FIBRA_08546	Uncharacterized protein; Belongs to the synaptobrevin family. (199 aa)
	FIBRA_01868	Uncharacterized protein. (886 aa)
	FIBRA_02055	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (223 aa)
	FIBRA_02981	Uncharacterized protein. (1442 aa)
	FIBRA_06285	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (719 aa)
	FIBRA_01041	Uncharacterized protein. (289 aa)
	FIBRA_02012	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events. (727 aa)
	FIBRA_02479	Uncharacterized protein. (961 aa)
	FIBRA_04924	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (187 aa)
	FIBRA_05258	Uncharacterized protein. (938 aa)
	FIBRA_07943	SEC7 domain-containing protein. (1456 aa)
	FIBRA_00066	Uncharacterized protein. (601 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_00066	FIBRA_00685	J7RG35	J4G0J7	Uncharacterized protein.	Uncharacterized protein.	0.997
FIBRA_00066	FIBRA_01041	J7RG35	J4HSN5	Uncharacterized protein.	Uncharacterized protein.	0.758
FIBRA_00066	FIBRA_01868	J7RG35	J4H1H9	Uncharacterized protein.	Uncharacterized protein.	0.999
FIBRA_00066	FIBRA_02012	J7RG35	J4HU85	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.	0.999
FIBRA_00066	FIBRA_02055	J7RG35	J4H1M4	Uncharacterized protein.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.933
FIBRA_00066	FIBRA_02465	J7RG35	J4G1P9	Uncharacterized protein.	Uncharacterized protein.	0.756
FIBRA_00066	FIBRA_02479	J7RG35	J4HV06	Uncharacterized protein.	Uncharacterized protein.	0.999
FIBRA_00066	FIBRA_04262	J7RG35	J4G737	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.814
FIBRA_00066	FIBRA_04924	J7RG35	J4HWT3	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.639
FIBRA_00066	FIBRA_05258	J7RG35	J4HX78	Uncharacterized protein.	Uncharacterized protein.	0.999
FIBRA_00066	FIBRA_06285	J7RG35	J4H3Z9	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.841
FIBRA_00066	FIBRA_06364	J7RG35	J4GB94	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.892
FIBRA_00066	FIBRA_07802	J7RG35	J4GVM4	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.639
FIBRA_00066	FIBRA_08327	J7RG35	J4GWL1	Uncharacterized protein.	Cog4 domain-containing protein.	0.999
FIBRA_00066	FIBRA_08546	J7RG35	J4GX03	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.801
FIBRA_00685	FIBRA_00066	J4G0J7	J7RG35	Uncharacterized protein.	Uncharacterized protein.	0.997
FIBRA_00685	FIBRA_01868	J4G0J7	J4H1H9	Uncharacterized protein.	Uncharacterized protein.	0.999
FIBRA_00685	FIBRA_02012	J4G0J7	J4HU85	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.	0.998
FIBRA_00685	FIBRA_02055	J4G0J7	J4H1M4	Uncharacterized protein.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.768
FIBRA_00685	FIBRA_02465	J4G0J7	J4G1P9	Uncharacterized protein.	Uncharacterized protein.	0.728