18 items (Fibroporia radiculosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_02023	Uncharacterized protein. (231 aa)
	FIBRA_03474	Uncharacterized protein. (209 aa)
	FIBRA_05699	Uncharacterized protein. (673 aa)
	FIBRA_08636	Uncharacterized protein. (553 aa)
	FIBRA_02000	Uncharacterized protein. (391 aa)
	FIBRA_02966	Alginate_lyase domain-containing protein. (679 aa)
	FIBRA_04264	SAGA-associated factor 11. (354 aa)
	FIBRA_06711	Uncharacterized protein. (219 aa)
	FIBRA_06993	Uncharacterized protein. (373 aa)
	FIBRA_02247	Uncharacterized protein. (224 aa)
	FIBRA_08514	Uncharacterized protein. (204 aa)
	FIBRA_01056	Uncharacterized protein. (258 aa)
	FIBRA_02541	Uncharacterized protein. (268 aa)
	FIBRA_05047	Uncharacterized protein. (380 aa)
	FIBRA_08010	Uncharacterized protein. (237 aa)
	FIBRA_02590	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (286 aa)
	FIBRA_02967	Uncharacterized protein. (275 aa)
	FIBRA_08477	Uncharacterized protein. (202 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_01056	FIBRA_02000	J4HSP4	J4GM31	Uncharacterized protein.	Uncharacterized protein.	0.729
FIBRA_01056	FIBRA_02023	J4HSP4	J4G1B2	Uncharacterized protein.	Uncharacterized protein.	0.859
FIBRA_01056	FIBRA_02247	J4HSP4	J4H1R2	Uncharacterized protein.	Uncharacterized protein.	0.688
FIBRA_01056	FIBRA_02541	J4HSP4	J4HV38	Uncharacterized protein.	Uncharacterized protein.	0.508
FIBRA_01056	FIBRA_02590	J4HSP4	J4I952	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.813
FIBRA_01056	FIBRA_02966	J4HSP4	J4GN79	Uncharacterized protein.	Alginate_lyase domain-containing protein.	0.717
FIBRA_01056	FIBRA_02967	J4HSP4	J4I9C5	Uncharacterized protein.	Uncharacterized protein.	0.740
FIBRA_01056	FIBRA_03474	J4HSP4	J4G5L5	Uncharacterized protein.	Uncharacterized protein.	0.821
FIBRA_01056	FIBRA_05047	J4HSP4	J4HWV7	Uncharacterized protein.	Uncharacterized protein.	0.734
FIBRA_01056	FIBRA_05699	J4HSP4	J4G9Y5	Uncharacterized protein.	Uncharacterized protein.	0.812
FIBRA_01056	FIBRA_06711	J4HSP4	J4GTB3	Uncharacterized protein.	Uncharacterized protein.	0.686
FIBRA_01056	FIBRA_08010	J4HSP4	J4I1W9	Uncharacterized protein.	Uncharacterized protein.	0.689
FIBRA_01056	FIBRA_08477	J4HSP4	J4ICD7	Uncharacterized protein.	Uncharacterized protein.	0.682
FIBRA_01056	FIBRA_08514	J4HSP4	J4H578	Uncharacterized protein.	Uncharacterized protein.	0.739
FIBRA_01056	FIBRA_08636	J4HSP4	J4GHY6	Uncharacterized protein.	Uncharacterized protein.	0.801
FIBRA_02000	FIBRA_01056	J4GM31	J4HSP4	Uncharacterized protein.	Uncharacterized protein.	0.729
FIBRA_02000	FIBRA_02023	J4GM31	J4G1B2	Uncharacterized protein.	Uncharacterized protein.	0.792
FIBRA_02000	FIBRA_02247	J4GM31	J4H1R2	Uncharacterized protein.	Uncharacterized protein.	0.698
FIBRA_02000	FIBRA_02541	J4GM31	J4HV38	Uncharacterized protein.	Uncharacterized protein.	0.761
FIBRA_02000	FIBRA_02590	J4GM31	J4I952	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.897