9 items (Fibroporia radiculosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_02877	Uncharacterized protein. (1482 aa)
	FIBRA_07485	Uncharacterized protein. (173 aa)
	FIBRA_08328	Uncharacterized protein. (204 aa)
	FIBRA_02416	Uncharacterized protein. (198 aa)
	FIBRA_02199	FH2 domain-containing protein. (411 aa)
	FIBRA_07268	Uncharacterized protein. (1487 aa)
	FIBRA_04650	Uncharacterized protein. (1453 aa)
	FIBRA_06346	Uncharacterized protein. (667 aa)
	FIBRA_04906	Uncharacterized protein. (265 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_02199	FIBRA_02416	J4I8X5	J4I918	FH2 domain-containing protein.	Uncharacterized protein.	0.905
FIBRA_02199	FIBRA_04906	J4I8X5	J4GQ14	FH2 domain-containing protein.	Uncharacterized protein.	0.653
FIBRA_02199	FIBRA_07268	J4I8X5	J4I0E5	FH2 domain-containing protein.	Uncharacterized protein.	0.588
FIBRA_02199	FIBRA_07485	J4I8X5	J4GEL3	FH2 domain-containing protein.	Uncharacterized protein.	0.905
FIBRA_02199	FIBRA_08328	J4I8X5	J4ICA7	FH2 domain-containing protein.	Uncharacterized protein.	0.905
FIBRA_02416	FIBRA_02199	J4I918	J4I8X5	Uncharacterized protein.	FH2 domain-containing protein.	0.905
FIBRA_02416	FIBRA_02877	J4I918	J4GN62	Uncharacterized protein.	Uncharacterized protein.	0.681
FIBRA_02416	FIBRA_04650	J4I918	J4HWN0	Uncharacterized protein.	Uncharacterized protein.	0.820
FIBRA_02416	FIBRA_04906	J4I918	J4GQ14	Uncharacterized protein.	Uncharacterized protein.	0.739
FIBRA_02416	FIBRA_06346	J4I918	J4H411	Uncharacterized protein.	Uncharacterized protein.	0.817
FIBRA_02416	FIBRA_07268	J4I918	J4I0E5	Uncharacterized protein.	Uncharacterized protein.	0.999
FIBRA_02416	FIBRA_08328	J4I918	J4ICA7	Uncharacterized protein.	Uncharacterized protein.	0.866
FIBRA_02877	FIBRA_02416	J4GN62	J4I918	Uncharacterized protein.	Uncharacterized protein.	0.681
FIBRA_02877	FIBRA_04906	J4GN62	J4GQ14	Uncharacterized protein.	Uncharacterized protein.	0.660
FIBRA_02877	FIBRA_07485	J4GN62	J4GEL3	Uncharacterized protein.	Uncharacterized protein.	0.681
FIBRA_02877	FIBRA_08328	J4GN62	J4ICA7	Uncharacterized protein.	Uncharacterized protein.	0.681
FIBRA_04650	FIBRA_02416	J4HWN0	J4I918	Uncharacterized protein.	Uncharacterized protein.	0.820
FIBRA_04650	FIBRA_06346	J4HWN0	J4H411	Uncharacterized protein.	Uncharacterized protein.	0.810
FIBRA_04650	FIBRA_07268	J4HWN0	J4I0E5	Uncharacterized protein.	Uncharacterized protein.	0.995
FIBRA_04650	FIBRA_07485	J4HWN0	J4GEL3	Uncharacterized protein.	Uncharacterized protein.	0.820