(5 nodes) Aminotransferase class-III network (Fibroporia radiculosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_00388	Uncharacterized protein. (815 aa)
	FIBRA_08441	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (477 aa)
	FIBRA_02740	Ornithine aminotransferase. (578 aa)
	FIBRA_04921	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (495 aa)
	FIBRA_01115	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (442 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_00388	FIBRA_08441	J4G059	J4GHE9	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.604
FIBRA_01115	FIBRA_08441	J4I8B1	J4GHE9	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.630
FIBRA_02740	FIBRA_08441	J4GN27	J4GHE9	Ornithine aminotransferase.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.617
FIBRA_04921	FIBRA_08441	J4H380	J4GHE9	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.675
FIBRA_08441	FIBRA_00388	J4GHE9	J4G059	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.604
FIBRA_08441	FIBRA_01115	J4GHE9	J4I8B1	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.630
FIBRA_08441	FIBRA_02740	J4GHE9	J4GN27	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Ornithine aminotransferase.	0.617
FIBRA_08441	FIBRA_04921	J4GHE9	J4H380	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.675