(46 nodes) Proteasome network (Fibroporia radiculosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_05356	VWFA domain-containing protein. (332 aa)
	FIBRA_05712	Proteasome endopeptidase complex. (184 aa)
	FIBRA_06372	Uncharacterized protein. (611 aa)
	FIBRA_06712	AAA domain-containing protein; Belongs to the AAA ATPase family. (399 aa)
	FIBRA_07044	Proteasome subunit alpha type. (247 aa)
	FIBRA_00286	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (991 aa)
	FIBRA_00070	PA28_beta domain-containing protein. (252 aa)
	FIBRA_05633	RPN13_C domain-containing protein. (119 aa)
	FIBRA_05023	AAA domain-containing protein. (876 aa)
	FIBRA_05685	AAA domain-containing protein; Belongs to the AAA ATPase family. (456 aa)
	FIBRA_07615	Proteasome subunit beta. (194 aa)
	FIBRA_00460	Pr_beta_C domain-containing protein. (272 aa)
	FIBRA_04370	PCI domain-containing protein. (454 aa)
	FIBRA_03704	Uncharacterized protein. (469 aa)
	FIBRA_03091	Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (397 aa)
	FIBRA_01546	Proteasome subunit beta. (252 aa)
	FIBRA_01988	Uncharacterized protein. (154 aa)
	FIBRA_01178	Uncharacterized protein. (1230 aa)
	FIBRA_01218	Uncharacterized protein. (152 aa)
	FIBRA_05632	Uncharacterized protein. (153 aa)
	FIBRA_02686	Nas2_N domain-containing protein. (231 aa)
	FIBRA_07045	PCI domain-containing protein. (265 aa)
	FIBRA_00705	Proteasome subunit alpha type. (280 aa)
	FIBRA_00770	PCI domain-containing protein. (476 aa)
	FIBRA_01448	JAB_MPN domain-containing protein. (283 aa)
	FIBRA_05031	Proteasome subunit alpha type. (224 aa)
	FIBRA_06789	Uncharacterized protein. (1266 aa)
	FIBRA_04497	AAA domain-containing protein; Belongs to the AAA ATPase family. (436 aa)
	FIBRA_02046	Proteasome subunit beta. (302 aa)
	FIBRA_02529	MPN domain-containing protein. (339 aa)
	FIBRA_03263	Uncharacterized protein. (1356 aa)
	FIBRA_03696	Uncharacterized protein. (2146 aa)
	FIBRA_06371	PCI domain-containing protein. (1377 aa)
	FIBRA_07028	Uncharacterized protein. (344 aa)
	FIBRA_00769	PCI domain-containing protein. (385 aa)
	FIBRA_01632	PCI domain-containing protein. (516 aa)
	FIBRA_03705	Uncharacterized protein. (348 aa)
	FIBRA_07046	Proteasome subunit beta. (240 aa)
	FIBRA_02103	Uncharacterized protein. (91 aa)
	FIBRA_01172	Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (256 aa)
	FIBRA_02058	Proteasome subunit beta; Belongs to the peptidase T1B family. (279 aa)
	FIBRA_03703	Uncharacterized protein. (2475 aa)
	FIBRA_06926	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (959 aa)
	FIBRA_02138	AAA domain-containing protein; Belongs to the AAA ATPase family. (448 aa)
	FIBRA_03209	Uncharacterized protein. (275 aa)
	FIBRA_03697	BLM10_mid domain-containing protein. (505 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_00070	FIBRA_00286	J7SBS3	J7RGT6	PA28_beta domain-containing protein.	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.897
FIBRA_00070	FIBRA_00460	J7SBS3	J4HRM9	PA28_beta domain-containing protein.	Pr_beta_C domain-containing protein.	0.978
FIBRA_00070	FIBRA_00705	J7SBS3	J4I831	PA28_beta domain-containing protein.	Proteasome subunit alpha type.	0.985
FIBRA_00070	FIBRA_00769	J7SBS3	J4H0N6	PA28_beta domain-containing protein.	PCI domain-containing protein.	0.883
FIBRA_00070	FIBRA_00770	J7SBS3	J4GIJ7	PA28_beta domain-containing protein.	PCI domain-containing protein.	0.871
FIBRA_00070	FIBRA_01172	J7SBS3	J4HSV9	PA28_beta domain-containing protein.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.983
FIBRA_00070	FIBRA_01218	J7SBS3	J4G0V3	PA28_beta domain-containing protein.	Uncharacterized protein.	0.617
FIBRA_00070	FIBRA_01448	J7SBS3	J4GK91	PA28_beta domain-containing protein.	JAB_MPN domain-containing protein.	0.913
FIBRA_00070	FIBRA_01546	J7SBS3	J4G118	PA28_beta domain-containing protein.	Proteasome subunit beta.	0.975
FIBRA_00070	FIBRA_01632	J7SBS3	J4H1B6	PA28_beta domain-containing protein.	PCI domain-containing protein.	0.739
FIBRA_00070	FIBRA_02046	J7SBS3	J4GM77	PA28_beta domain-containing protein.	Proteasome subunit beta.	0.963
FIBRA_00070	FIBRA_02058	J7SBS3	J4HUB0	PA28_beta domain-containing protein.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.976
FIBRA_00070	FIBRA_02138	J7SBS3	J4I8W3	PA28_beta domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.862
FIBRA_00070	FIBRA_02529	J7SBS3	J4GMY3	PA28_beta domain-containing protein.	MPN domain-containing protein.	0.870
FIBRA_00070	FIBRA_02686	J7SBS3	J4G2B6	PA28_beta domain-containing protein.	Nas2_N domain-containing protein.	0.672
FIBRA_00070	FIBRA_03091	J7SBS3	J4G445	PA28_beta domain-containing protein.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.982
FIBRA_00070	FIBRA_03209	J7SBS3	J4I9H3	PA28_beta domain-containing protein.	Uncharacterized protein.	0.630
FIBRA_00070	FIBRA_03263	J7SBS3	J4GND8	PA28_beta domain-containing protein.	Uncharacterized protein.	0.904
FIBRA_00070	FIBRA_04370	J7SBS3	J4G793	PA28_beta domain-containing protein.	PCI domain-containing protein.	0.739
FIBRA_00070	FIBRA_04497	J7SBS3	J4H2Z8	PA28_beta domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.885