19 items (Fibroporia radiculosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FIBRA_00506	Sec8_exocyst domain-containing protein. (1356 aa)
	FIBRA_01117	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (900 aa)
	FIBRA_01122	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (92 aa)
	FIBRA_02095	RNase H domain-containing protein. (526 aa)
	FIBRA_05777	Uncharacterized protein. (213 aa)
	FIBRA_07785	Uncharacterized protein. (442 aa)
	FIBRA_01633	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. (126 aa)
	FIBRA_07591	F-box domain-containing protein. (966 aa)
	FIBRA_00596	ELMO domain-containing protein. (776 aa)
	FIBRA_02876	Uncharacterized protein. (424 aa)
	FIBRA_04810	Importin N-terminal domain-containing protein. (990 aa)
	FIBRA_05184	Protein kinase domain-containing protein. (495 aa)
	FIBRA_07786	Uncharacterized protein. (391 aa)
	FIBRA_01121	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (276 aa)
	FIBRA_03808	Uncharacterized protein. (1159 aa)
	FIBRA_09070	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (108 aa)
	FIBRA_02678	Uncharacterized protein. (793 aa)
	FIBRA_00249	Atg29_N domain-containing protein. (455 aa)
	FIBRA_00250	Uncharacterized protein. (324 aa)

Your Current Organism:

Fibroporia radiculosa

NCBI taxonomy Id: 599839
Other names: Antrodia radiculosa, F. radiculosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIBRA_00506	FIBRA_01117	J4HRQ5	J4G0T1	Sec8_exocyst domain-containing protein.	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.999
FIBRA_00506	FIBRA_07591	J4HRQ5	J4GVA1	Sec8_exocyst domain-containing protein.	F-box domain-containing protein.	0.948
FIBRA_00506	FIBRA_07785	J4HRQ5	J4GFJ4	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.994
FIBRA_00506	FIBRA_07786	J4HRQ5	J4H4T7	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.982
FIBRA_01117	FIBRA_00506	J4G0T1	J4HRQ5	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Sec8_exocyst domain-containing protein.	0.999
FIBRA_01117	FIBRA_07591	J4G0T1	J4GVA1	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	F-box domain-containing protein.	0.947
FIBRA_01117	FIBRA_07785	J4G0T1	J4GFJ4	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Uncharacterized protein.	0.989
FIBRA_01117	FIBRA_07786	J4G0T1	J4H4T7	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Uncharacterized protein.	0.982
FIBRA_01121	FIBRA_01122	J4HST1	J4G0T2	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.958
FIBRA_01122	FIBRA_01121	J4G0T2	J4HST1	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	0.958
FIBRA_01633	FIBRA_05777	J4GKU7	J4GA31	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	Uncharacterized protein.	0.449
FIBRA_05777	FIBRA_01633	J4GA31	J4GKU7	Uncharacterized protein.	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	0.449
FIBRA_07591	FIBRA_00506	J4GVA1	J4HRQ5	F-box domain-containing protein.	Sec8_exocyst domain-containing protein.	0.948
FIBRA_07591	FIBRA_01117	J4GVA1	J4G0T1	F-box domain-containing protein.	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.947
FIBRA_07785	FIBRA_00506	J4GFJ4	J4HRQ5	Uncharacterized protein.	Sec8_exocyst domain-containing protein.	0.994
FIBRA_07785	FIBRA_01117	J4GFJ4	J4G0T1	Uncharacterized protein.	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.989
FIBRA_07785	FIBRA_07786	J4GFJ4	J4H4T7	Uncharacterized protein.	Uncharacterized protein.	0.961
FIBRA_07786	FIBRA_00506	J4H4T7	J4HRQ5	Uncharacterized protein.	Sec8_exocyst domain-containing protein.	0.982
FIBRA_07786	FIBRA_01117	J4H4T7	J4G0T1	Uncharacterized protein.	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.982
FIBRA_07786	FIBRA_07785	J4H4T7	J4GFJ4	Uncharacterized protein.	Uncharacterized protein.	0.961