STRINGSTRING
bamD bamD SDW09460.1 SDW09460.1 rpoH rpoH rpoD rpoD SDW41067.1 SDW41067.1 SDW38051.1 SDW38051.1 SDW56642.1 SDW56642.1 SDW57297.1 SDW57297.1 SDW57339.1 SDW57339.1 SDW57369.1 SDW57369.1 SDW59549.1 SDW59549.1 SDW76826.1 SDW76826.1 SDW82290.1 SDW82290.1 lysS lysS SDX06324.1 SDX06324.1 SDW97691.1 SDW97691.1 SDX28743.1 SDX28743.1 SDX28777.1 SDX28777.1 SDX28806.1 SDX28806.1 SDX28837.1 SDX28837.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
bamDBeta-barrel assembly machine subunit BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (290 aa)
SDW09460.1Transcriptional regulator, CarD family. (171 aa)
rpoHRNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (298 aa)
rpoDRNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (660 aa)
SDW41067.1Hypothetical protein. (156 aa)
SDW38051.1Beta-barrel assembly machine subunit BamE. (154 aa)
SDW56642.1Uncharacterized conserved protein, UPF0335 family. (95 aa)
SDW57297.1Hypothetical protein. (117 aa)
SDW57339.1NADH:ubiquinone oxidoreductase subunit. (127 aa)
SDW57369.1Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family. (119 aa)
SDW59549.1Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat. (459 aa)
SDW76826.1SH3-like domain-containing protein. (168 aa)
SDW82290.1Hypothetical protein; Belongs to the BI1 family. (258 aa)
lysSlysyl-tRNA synthetase, class I; Belongs to the class-I aminoacyl-tRNA synthetase family. (526 aa)
SDX06324.1Hypothetical protein. (253 aa)
SDW97691.1GcrA cell cycle regulator. (199 aa)
SDX28743.1DNA-nicking endonuclease, Smr domain. (199 aa)
SDX28777.1Membrane-bound lytic murein transglycosylase A. (353 aa)
SDX28806.1Predicted lipid-binding transport protein, Tim44 family. (219 aa)
SDX28837.1UPF0716 protein FxsA. (164 aa)
Your Current Organism:
Sulfitobacter pontiacus
NCBI taxonomy Id: 60137
Other names: DSM 10014, JCM 21789, S. pontiacus, VKM B-2022, strain ChLG 10
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