(10 nodes) Mixed, incl. Alpha-L-rhamnosidase N-terminal domain, and L-ornithine transmembrane transporter activity network (Penicillium solitum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6QM70	Uncharacterized protein. (353 aa)
	A0A1V6QTK6	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (332 aa)
	A0A1V6QTP5	Uncharacterized protein. (78 aa)
	A0A1V6QUD5	Uncharacterized protein. (917 aa)
	A0A1V6QUJ0	Uncharacterized protein. (891 aa)
	A0A1V6R4T9	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (322 aa)
	A0A1V6R7R6	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (304 aa)
	A0A1V6RHK6	Uncharacterized protein. (617 aa)
	A0A1V6RKK5	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (308 aa)
	A0A1V6RNN2	Uncharacterized protein. (574 aa)

Your Current Organism:

Penicillium solitum

NCBI taxonomy Id: 60172
Other names: ATCC 9923, CBS 288.36, CBS 424.89, FRR 937, IBT 3948, IFO 7765, IMI 039810, IMI 092225, LSHB P52, MUCL 28668, MUCL 29173, NRRL 937, P. solitum

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Export your current network:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6QM70	A0A1V6QTK6	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.593
A0A1V6QM70	A0A1V6R4T9	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.593
A0A1V6QM70	A0A1V6R7R6	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.593
A0A1V6QM70	A0A1V6RHK6	Uncharacterized protein.	Uncharacterized protein.	0.691
A0A1V6QM70	A0A1V6RKK5	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.593
A0A1V6QM70	A0A1V6RNN2	Uncharacterized protein.	Uncharacterized protein.	0.691
A0A1V6QTK6	A0A1V6QM70	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.593
A0A1V6QTK6	A0A1V6QUD5	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.593
A0A1V6QTK6	A0A1V6QUJ0	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.593
A0A1V6QTK6	A0A1V6RHK6	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.653
A0A1V6QTK6	A0A1V6RNN2	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.653
A0A1V6QUD5	A0A1V6QTK6	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.593
A0A1V6QUD5	A0A1V6R4T9	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.593
A0A1V6QUD5	A0A1V6R7R6	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.593
A0A1V6QUD5	A0A1V6RHK6	Uncharacterized protein.	Uncharacterized protein.	0.691
A0A1V6QUD5	A0A1V6RKK5	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.593
A0A1V6QUD5	A0A1V6RNN2	Uncharacterized protein.	Uncharacterized protein.	0.691
A0A1V6QUJ0	A0A1V6QTK6	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.593
A0A1V6QUJ0	A0A1V6R4T9	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.593
A0A1V6QUJ0	A0A1V6R7R6	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.593

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