Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
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Neighborhood
Groups of genes that are frequently observed in each other's genomic neighborhood.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A1V6QDG9
Uncharacterized protein. (187 aa)
A0A1V6QJT1
Uncharacterized protein. (579 aa)
A0A1V6QT92
PNP_UDP_1 domain-containing protein. (166 aa)
A0A1V6QZP1
Uncharacterized protein. (110 aa)
A0A1V6R5C2
Uncharacterized protein. (119 aa)
Your Current Organism:
Penicillium solitum
NCBI taxonomy Id: 60172 Other names: ATCC 9923, CBS 288.36, CBS 424.89, FRR 937, IBT 3948, IFO 7765, IMI 039810, IMI 092225, LSHB P52, MUCL 28668, MUCL 29173, NRRL 937, P. solitum