(8 nodes) Centromeric DNA binding network (Penicillium solitum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6PU97	Uncharacterized protein. (820 aa)
	A0A1V6QCJ7	Uncharacterized protein. (534 aa)
	A0A1V6QQQ7	Uncharacterized protein. (211 aa)
	A0A1V6R3Q6	Uncharacterized protein. (362 aa)
	A0A1V6QZU0	Uncharacterized protein. (620 aa)
	A0A1V6QR19	Uncharacterized protein. (382 aa)
	A0A1V6QTZ0	Uncharacterized protein. (352 aa)
	A0A1V6QT97	Uncharacterized protein. (191 aa)

Your Current Organism:

Penicillium solitum

NCBI taxonomy Id: 60172
Other names: ATCC 9923, CBS 288.36, CBS 424.89, FRR 937, IBT 3948, IFO 7765, IMI 039810, IMI 092225, LSHB P52, MUCL 28668, MUCL 29173, NRRL 937, P. solitum

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6PU97	A0A1V6QR19	Uncharacterized protein.	Uncharacterized protein.	0.798
A0A1V6QCJ7	A0A1V6QR19	Uncharacterized protein.	Uncharacterized protein.	0.798
A0A1V6QQQ7	A0A1V6QR19	Uncharacterized protein.	Uncharacterized protein.	0.798
A0A1V6QR19	A0A1V6PU97	Uncharacterized protein.	Uncharacterized protein.	0.798
A0A1V6QR19	A0A1V6QCJ7	Uncharacterized protein.	Uncharacterized protein.	0.798
A0A1V6QR19	A0A1V6QQQ7	Uncharacterized protein.	Uncharacterized protein.	0.798
A0A1V6QR19	A0A1V6QT97	Uncharacterized protein.	Uncharacterized protein.	0.798
A0A1V6QR19	A0A1V6QTZ0	Uncharacterized protein.	Uncharacterized protein.	0.798
A0A1V6QR19	A0A1V6R3Q6	Uncharacterized protein.	Uncharacterized protein.	0.798
A0A1V6QT97	A0A1V6QR19	Uncharacterized protein.	Uncharacterized protein.	0.798
A0A1V6QTZ0	A0A1V6QR19	Uncharacterized protein.	Uncharacterized protein.	0.798
A0A1V6R3Q6	A0A1V6QR19	Uncharacterized protein.	Uncharacterized protein.	0.798

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