(33 nodes) RNA Polymerase I Transcription network (Penicillium solitum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1V6QTW7	Uncharacterized protein. (822 aa)
	A0A1V6Q5E4	Uncharacterized protein. (74 aa)
	A0A1V6QLR2	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	A0A1V6QM53	Uncharacterized protein. (387 aa)
	A0A1V6QN15	Uncharacterized protein. (234 aa)
	A0A1V6QN45	Helicase ATP-binding domain-containing protein. (795 aa)
	A0A1V6QPZ6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1671 aa)
	A0A1V6QQE8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (404 aa)
	A0A1V6QQS5	Histone H2B; Belongs to the histone H2B family. (141 aa)
	A0A1V6QR04	Uncharacterized protein. (291 aa)
	A0A1V6QX02	Uncharacterized protein. (265 aa)
	A0A1V6QXW5	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (480 aa)
	A0A1V6QYR0	Uncharacterized protein. (619 aa)
	A0A1V6R0G6	Uncharacterized protein. (78 aa)
	A0A1V6R214	Uncharacterized protein. (569 aa)
	A0A1V6R463	Uncharacterized protein. (377 aa)
	A0A1V6R625	Uncharacterized protein. (72 aa)
	A0A1V6R666	Uncharacterized protein. (689 aa)
	A0A1V6R936	Uncharacterized protein. (497 aa)
	A0A1V6R963	CYCLIN domain-containing protein; Belongs to the cyclin family. (428 aa)
	A0A1V6RB32	Uncharacterized protein. (234 aa)
	A0A1V6RB60	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (447 aa)
	A0A1V6RCE4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (121 aa)
	A0A1V6RCT4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1249 aa)
	A0A1V6RJ20	BSD domain-containing protein. (651 aa)
	A0A1V6RJD0	SprT-like domain-containing protein. (594 aa)
	A0A1V6RJI9	Uncharacterized protein. (1518 aa)
	A0A1V6RKV4	Ubiquitin-like domain-containing protein. (155 aa)
	A0A1V6RLU6	Uncharacterized protein. (153 aa)
	A0A1V6RM36	RING-type domain-containing protein. (370 aa)
	A0A1V6RMA3	RRN7-type domain-containing protein. (600 aa)
	A0A1V6RNA5	Uncharacterized protein. (694 aa)
	A0A1V6RQM7	RPOLD domain-containing protein. (374 aa)

Your Current Organism:

Penicillium solitum

NCBI taxonomy Id: 60172
Other names: ATCC 9923, CBS 288.36, CBS 424.89, FRR 937, IBT 3948, IFO 7765, IMI 039810, IMI 092225, LSHB P52, MUCL 28668, MUCL 29173, NRRL 937, P. solitum

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6Q5E4	A0A1V6QLR2	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
A0A1V6Q5E4	A0A1V6QM53	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1V6Q5E4	A0A1V6QN15	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1V6Q5E4	A0A1V6QN45	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.970
A0A1V6Q5E4	A0A1V6QPZ6	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A0A1V6Q5E4	A0A1V6QQE8	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.878
A0A1V6Q5E4	A0A1V6QQS5	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.943
A0A1V6Q5E4	A0A1V6QTW7	Uncharacterized protein.	Uncharacterized protein.	0.966
A0A1V6Q5E4	A0A1V6QX02	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A1V6Q5E4	A0A1V6QXW5	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.966
A0A1V6Q5E4	A0A1V6R0G6	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1V6Q5E4	A0A1V6R463	Uncharacterized protein.	Uncharacterized protein.	0.966
A0A1V6Q5E4	A0A1V6R625	Uncharacterized protein.	Uncharacterized protein.	0.882
A0A1V6Q5E4	A0A1V6R666	Uncharacterized protein.	Uncharacterized protein.	0.970
A0A1V6Q5E4	A0A1V6R936	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A1V6Q5E4	A0A1V6R963	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.934
A0A1V6Q5E4	A0A1V6RB60	Uncharacterized protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.966
A0A1V6Q5E4	A0A1V6RCE4	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
A0A1V6Q5E4	A0A1V6RCT4	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A0A1V6Q5E4	A0A1V6RJ20	Uncharacterized protein.	BSD domain-containing protein.	0.966

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