(30 nodes) Spliceosomal snRNP complex network (Aspergillus carbonarius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1R3R5V8	PSP domain-containing protein. (547 aa)
	A0A1R3R6V5	Small nuclear ribonucleoprotein Sm D3. (116 aa)
	A0A1R3R8F2	TPR_REGION domain-containing protein. (820 aa)
	A0A1R3R8J0	RRM domain-containing protein. (113 aa)
	A0A1R3R946	Uncharacterized protein. (262 aa)
	A0A1R3R970	WD_REPEATS_REGION domain-containing protein. (359 aa)
	A0A1R3RAC4	Uncharacterized protein. (253 aa)
	A0A1R3RF87	Uncharacterized protein. (86 aa)
	A0A1R3RFG8	Small nuclear ribonucleoprotein Sm D2. (115 aa)
	A0A1R3RKC1	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (118 aa)
	A0A1R3RMT6	Matrin-type domain-containing protein. (238 aa)
	A0A1R3RNE7	JAB_MPN domain-containing protein. (2353 aa)
	A0A1R3RP62	Tr-type G domain-containing protein. (990 aa)
	A0A1R3RPB6	WD_REPEATS_REGION domain-containing protein. (529 aa)
	A0A1R3RPE3	Small nuclear ribonucleoprotein G. (78 aa)
	A0A1R3RPE8	Uncharacterized protein. (2212 aa)
	A0A1R3RR16	RRM domain-containing protein. (188 aa)
	A0A1R3RSH1	Splicing factor subunit; Belongs to the SF3B5 family. (101 aa)
	A0A1R3RTS1	Sm domain-containing protein. (218 aa)
	A0A1R3RUR0	Uncharacterized protein. (670 aa)
	A0A1R3RV95	Uncharacterized protein. (108 aa)
	A0A1R3RVU4	Uncharacterized protein. (534 aa)
	A0A1R3RWS5	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
	A0A1R3RYG0	SF3b1 domain-containing protein. (1233 aa)
	A0A1R3RZM9	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (143 aa)
	A0A1R3RZX7	C2H2-type domain-containing protein. (505 aa)
	A0A1R3S1G0	CPSF_A domain-containing protein. (1209 aa)
	A0A1R3S1U2	Uncharacterized protein. (541 aa)
	A0A1R3S2V9	Uncharacterized protein; Belongs to the DEAD box helicase family. (781 aa)
	A0A1R3S2Y8	Nop domain-containing protein. (518 aa)

Your Current Organism:

Aspergillus carbonarius

NCBI taxonomy Id: 602072
Other names: A. carbonarius ITEM 5010, Aspergillus carbonarius ITEM 5010

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1R3R5V8	A0A1R3R6V5	PSP domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.984
A0A1R3R5V8	A0A1R3R8F2	PSP domain-containing protein.	TPR_REGION domain-containing protein.	0.992
A0A1R3R5V8	A0A1R3R8J0	PSP domain-containing protein.	RRM domain-containing protein.	0.999
A0A1R3R5V8	A0A1R3R946	PSP domain-containing protein.	Uncharacterized protein.	0.951
A0A1R3R5V8	A0A1R3R970	PSP domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.655
A0A1R3R5V8	A0A1R3RAC4	PSP domain-containing protein.	Uncharacterized protein.	0.995
A0A1R3R5V8	A0A1R3RF87	PSP domain-containing protein.	Uncharacterized protein.	0.981
A0A1R3R5V8	A0A1R3RFG8	PSP domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.992
A0A1R3R5V8	A0A1R3RKC1	PSP domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.981
A0A1R3R5V8	A0A1R3RMT6	PSP domain-containing protein.	Matrin-type domain-containing protein.	0.995
A0A1R3R5V8	A0A1R3RNE7	PSP domain-containing protein.	JAB_MPN domain-containing protein.	0.983
A0A1R3R5V8	A0A1R3RP62	PSP domain-containing protein.	Tr-type G domain-containing protein.	0.969
A0A1R3R5V8	A0A1R3RPB6	PSP domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.921
A0A1R3R5V8	A0A1R3RPE3	PSP domain-containing protein.	Small nuclear ribonucleoprotein G.	0.984
A0A1R3R5V8	A0A1R3RPE8	PSP domain-containing protein.	Uncharacterized protein.	0.991
A0A1R3R5V8	A0A1R3RR16	PSP domain-containing protein.	RRM domain-containing protein.	0.988
A0A1R3R5V8	A0A1R3RSH1	PSP domain-containing protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.998
A0A1R3R5V8	A0A1R3RTS1	PSP domain-containing protein.	Sm domain-containing protein.	0.990
A0A1R3R5V8	A0A1R3RUR0	PSP domain-containing protein.	Uncharacterized protein.	0.990
A0A1R3R5V8	A0A1R3RV95	PSP domain-containing protein.	Uncharacterized protein.	0.998