(38 nodes) Catalytic step 2 spliceosome network (Aspergillus carbonarius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1R3RP62	Tr-type G domain-containing protein. (990 aa)
	A0A1R3RPE3	Small nuclear ribonucleoprotein G. (78 aa)
	A0A1R3RPJ4	Uncharacterized protein. (355 aa)
	A0A1R3RQL3	PPIase cyclophilin-type domain-containing protein. (564 aa)
	A0A1R3RCR8	Uncharacterized protein. (474 aa)
	A0A1R3RA60	RRM domain-containing protein. (383 aa)
	A0A1R3RCI6	Uncharacterized protein. (395 aa)
	A0A1R3R9X7	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1417 aa)
	A0A1R3R970	WD_REPEATS_REGION domain-containing protein. (359 aa)
	A0A1R3R946	Uncharacterized protein. (262 aa)
	A0A1R3R8J0	RRM domain-containing protein. (113 aa)
	A0A1R3R8F2	TPR_REGION domain-containing protein. (820 aa)
	A0A1R3R6M7	Uncharacterized protein. (554 aa)
	A0A1R3R5V8	PSP domain-containing protein. (547 aa)
	A0A1R3RRG3	Uncharacterized protein. (215 aa)
	A0A1R3RRT0	Helicase C-terminal domain-containing protein. (421 aa)
	A0A1R3RS03	Uncharacterized protein. (304 aa)
	A0A1R3RSB1	MI domain-containing protein. (646 aa)
	A0A1R3RSN9	TPR_REGION domain-containing protein. (837 aa)
	A0A1R3RTS1	Sm domain-containing protein. (218 aa)
	A0A1R3RUY9	Uncharacterized protein. (306 aa)
	A0A1R3RV54	Pinin_SDK_memA domain-containing protein. (309 aa)
	A0A1R3RVU4	Uncharacterized protein. (534 aa)
	A0A1R3RXI2	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (212 aa)
	A0A1R3RY81	RRM domain-containing protein. (152 aa)
	A0A1R3RYG0	SF3b1 domain-containing protein. (1233 aa)
	A0A1R3RZY9	Uncharacterized protein. (290 aa)
	A0A1R3S2W1	WD_REPEATS_REGION domain-containing protein. (454 aa)
	A0A1R3S309	Uncharacterized protein. (675 aa)
	A0A1R3RFG8	Small nuclear ribonucleoprotein Sm D2. (115 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	A0A1R3RG36	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
	A0A1R3RIL7	Uncharacterized protein. (334 aa)
	A0A1R3RLP2	Sm domain-containing protein. (136 aa)
	A0A1R3RMT6	Matrin-type domain-containing protein. (238 aa)
	A0A1R3RMY4	Uncharacterized protein. (629 aa)
	A0A1R3RNE7	JAB_MPN domain-containing protein. (2353 aa)
	A0A1R3RNQ8	WD_REPEATS_REGION domain-containing protein. (586 aa)

Your Current Organism:

Aspergillus carbonarius

NCBI taxonomy Id: 602072
Other names: A. carbonarius ITEM 5010, Aspergillus carbonarius ITEM 5010

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1R3R5V8	A0A1R3R8F2	A0A1R3R5V8	A0A1R3R8F2	PSP domain-containing protein.	TPR_REGION domain-containing protein.	0.992
A0A1R3R5V8	A0A1R3R8J0	A0A1R3R5V8	A0A1R3R8J0	PSP domain-containing protein.	RRM domain-containing protein.	0.999
A0A1R3R5V8	A0A1R3R946	A0A1R3R5V8	A0A1R3R946	PSP domain-containing protein.	Uncharacterized protein.	0.951
A0A1R3R5V8	A0A1R3R970	A0A1R3R5V8	A0A1R3R970	PSP domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.655
A0A1R3R5V8	A0A1R3R9X7	A0A1R3R5V8	A0A1R3R9X7	PSP domain-containing protein.	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.	0.646
A0A1R3R5V8	A0A1R3RA60	A0A1R3R5V8	A0A1R3RA60	PSP domain-containing protein.	RRM domain-containing protein.	0.919
A0A1R3R5V8	A0A1R3RCI6	A0A1R3R5V8	A0A1R3RCI6	PSP domain-containing protein.	Uncharacterized protein.	0.859
A0A1R3R5V8	A0A1R3RFG8	A0A1R3R5V8	A0A1R3RFG8	PSP domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.992
A0A1R3R5V8	A0A1R3RG36	A0A1R3R5V8	A0A1R3RG36	PSP domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.678
A0A1R3R5V8	A0A1R3RLP2	A0A1R3R5V8	A0A1R3RLP2	PSP domain-containing protein.	Sm domain-containing protein.	0.915
A0A1R3R5V8	A0A1R3RMT6	A0A1R3R5V8	A0A1R3RMT6	PSP domain-containing protein.	Matrin-type domain-containing protein.	0.995
A0A1R3R5V8	A0A1R3RNE7	A0A1R3R5V8	A0A1R3RNE7	PSP domain-containing protein.	JAB_MPN domain-containing protein.	0.983
A0A1R3R5V8	A0A1R3RNQ8	A0A1R3R5V8	A0A1R3RNQ8	PSP domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.941
A0A1R3R5V8	A0A1R3RP62	A0A1R3R5V8	A0A1R3RP62	PSP domain-containing protein.	Tr-type G domain-containing protein.	0.969
A0A1R3R5V8	A0A1R3RPE3	A0A1R3R5V8	A0A1R3RPE3	PSP domain-containing protein.	Small nuclear ribonucleoprotein G.	0.984
A0A1R3R5V8	A0A1R3RPJ4	A0A1R3R5V8	A0A1R3RPJ4	PSP domain-containing protein.	Uncharacterized protein.	0.934
A0A1R3R5V8	A0A1R3RQL3	A0A1R3R5V8	A0A1R3RQL3	PSP domain-containing protein.	PPIase cyclophilin-type domain-containing protein.	0.939
A0A1R3R5V8	A0A1R3RRG3	A0A1R3R5V8	A0A1R3RRG3	PSP domain-containing protein.	Uncharacterized protein.	0.672
A0A1R3R5V8	A0A1R3RRT0	A0A1R3R5V8	A0A1R3RRT0	PSP domain-containing protein.	Helicase C-terminal domain-containing protein.	0.851
A0A1R3R5V8	A0A1R3RSB1	A0A1R3R5V8	A0A1R3RSB1	PSP domain-containing protein.	MI domain-containing protein.	0.958