STRINGSTRING
KARS1 KARS1 IKBIP IKBIP BRCA2 BRCA2 BLM BLM NIPBL NIPBL ERCC8 ERCC8 SFRP1 SFRP1 XRCC4 XRCC4 NUCKS1 NUCKS1 MSH2 MSH2 TP53 TP53 CCND2 CCND2 ERCC6 ERCC6 TP53BP1 TP53BP1 XRCC5 XRCC5 RAD51 RAD51 DNM2 DNM2 PRAP1 PRAP1 XRCC2 XRCC2 ENSCSAP00000002816 ENSCSAP00000002816 XRCC6 XRCC6 XRRA1 XRRA1 THBD THBD LIG4 LIG4 ATM ATM ERCC1 ERCC1 SFRP2 SFRP2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KARS1Lysine--tRNA ligase. (625 aa)
IKBIPIKBKB interacting protein. (379 aa)
BRCA2BRCA2 DNA repair associated. (3420 aa)
BLMBLM RecQ like helicase. (1423 aa)
NIPBLNipped-B protein. (2804 aa)
ERCC8ERCC excision repair 8, CSA ubiquitin ligase complex subunit. (396 aa)
SFRP1Secreted frizzled related protein 1. (314 aa)
XRCC4X-ray repair cross complementing 4. (334 aa)
NUCKS1Nuclear casein kinase and cyclin dependent kinase substrate 1. (243 aa)
MSH2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (933 aa)
TP53Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. (393 aa)
CCND2Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (289 aa)
ERCC6ERCC excision repair 6, chromatin remodeling factor. (1494 aa)
TP53BP1Tumor protein p53 binding protein 1. (1977 aa)
XRCC5X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (732 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
DNM2Dynamin 2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (880 aa)
PRAP1Uncharacterized protein. (152 aa)
XRCC2X-ray repair cross complementing 2. (280 aa)
ENSCSAP00000002816MPN domain-containing protein. (320 aa)
XRCC6X-ray repair cross complementing 6. (609 aa)
XRRA1X-ray radiation resistance associated 1. (792 aa)
THBDThrombomodulin. (626 aa)
LIG4DNA ligase. (911 aa)
ATMSerine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...] (3056 aa)
ERCC1ERCC excision repair 1, endonuclease non-catalytic subunit. (298 aa)
SFRP2Secreted frizzled related protein 2. (295 aa)
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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