STRINGSTRING
POLE3 POLE3 TOPBP1 TOPBP1 SLX4 SLX4 XRCC3 XRCC3 EXO1 EXO1 BARD1 BARD1 RFC4 RFC4 RAD9A RAD9A POLD4 POLD4 RMI2 RMI2 RECQL4 RECQL4 TOP3A TOP3A KAT5 KAT5 GEN1 GEN1 DNA2 DNA2 POLE POLE ENSCSAP00000017472 ENSCSAP00000017472 ENSCSAP00000017575 ENSCSAP00000017575 ENSCSAP00000017765 ENSCSAP00000017765 RMI1 RMI1 ENSCSAP00000018444 ENSCSAP00000018444 UBC UBC ENSCSAP00000007123 ENSCSAP00000007123 HUS1 HUS1 WRN WRN POLE4 POLE4 RTEL1 RTEL1 RFC1 RFC1 BLM BLM RAD1 RAD1 TDRD3 TDRD3 RBBP8 RBBP8 RCBTB1 RCBTB1 RCBTB2 RCBTB2 ATRIP ATRIP RAD17 RAD17 POLD2 POLD2 POLK POLK POLE2 POLE2 SPIDR SPIDR RPS27A RPS27A RPA1 RPA1 RAD50 RAD50 PCNA PCNA RAD51B RAD51B RPA3 RPA3 EXD2 EXD2 NBN NBN RAD51 RAD51 ENSCSAP00000003124 ENSCSAP00000003124 PALB2 PALB2 XRCC2 XRCC2 RAD51D RAD51D SLX1 SLX1 BRIP1 BRIP1 RAD51C RAD51C EME1 EME1 KXD1 KXD1 UBA52 UBA52 POLD3 POLD3 RFC3 RFC3 BRCA2 BRCA2 RFC2 RFC2 BRCA1 BRCA1 MRE11 MRE11 ATM ATM RAD9B RAD9B RFC5 RFC5 RAD51AP1 RAD51AP1 MEIOB MEIOB CHEK1 CHEK1 POLD1 POLD1 RHNO1 RHNO1 ATR ATR EME2 EME2 POLH POLH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
POLE3DNA polymerase epsilon 3, accessory subunit. (147 aa)
TOPBP1DNA topoisomerase II binding protein 1. (1527 aa)
SLX4Uncharacterized protein. (929 aa)
XRCC3DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (346 aa)
EXO1Exonuclease 1. (845 aa)
BARD1BRCA1 associated RING domain 1. (777 aa)
RFC4Replication factor C subunit 4. (363 aa)
RAD9ACell cycle checkpoint control protein; Belongs to the rad9 family. (390 aa)
POLD4Uncharacterized protein. (107 aa)
RMI2RecQ mediated genome instability 2. (147 aa)
RECQL4RecQ like helicase 4. (1210 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1000 aa)
KAT5Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (522 aa)
GEN1GEN1 Holliday junction 5' flap endonuclease. (907 aa)
DNA2DNA replication helicase/nuclease 2. (1061 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2288 aa)
ENSCSAP00000017472ERCC4 domain-containing protein. (551 aa)
ENSCSAP00000017575Ubiquitin-like domain-containing protein. (156 aa)
ENSCSAP00000017765Ubiquitin-like domain-containing protein. (155 aa)
RMI1RecQ mediated genome instability 1. (625 aa)
ENSCSAP00000018444Ubiquitin-like domain-containing protein. (127 aa)
UBCUncharacterized protein. (228 aa)
ENSCSAP00000007123RAD51_interact domain-containing protein. (319 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (280 aa)
WRNWRN RecQ like helicase. (1399 aa)
POLE4DNA polymerase epsilon 4, accessory subunit. (117 aa)
RTEL1Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...] (1406 aa)
RFC1Replication factor C subunit 1. (985 aa)
BLMBLM RecQ like helicase. (1423 aa)
RAD1RAD1 checkpoint DNA exonuclease. (280 aa)
TDRD3Tudor domain containing 3. (744 aa)
RBBP8RB binding protein 8, endonuclease. (897 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
RCBTB2RCC1 and BTB domain containing protein 2. (551 aa)
ATRIPATR interacting protein. (790 aa)
RAD17RAD17 checkpoint clamp loader component. (681 aa)
POLD2DNA polymerase delta 2, accessory subunit. (469 aa)
POLKDNA polymerase kappa. (847 aa)
POLE2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
SPIDRScaffold protein involved in DNA repair. (939 aa)
RPS27AUbiquitin-like domain-containing protein. (156 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (557 aa)
RAD50Zinc-hook domain-containing protein. (1312 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
RAD51BRAD51 paralog B. (265 aa)
RPA3Replication protein A3. (121 aa)
EXD2Exonuclease 3'-5' domain containing 2. (636 aa)
NBNNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (753 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
ENSCSAP00000003124BTB domain-containing protein. (463 aa)
PALB2Partner and localizer of BRCA2. (1183 aa)
XRCC2X-ray repair cross complementing 2. (280 aa)
RAD51DDNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the RecA family. RAD51 subfamily. (328 aa)
SLX1Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. Has a preference for 5'-flap structures, and promotes symmetrical cleavage of static and migrating Holliday junctions (HJs). Resolves HJs by generating two pairs of ligatable, nicked duplex products. (275 aa)
BRIP1BRCA1 interacting protein C-terminal helicase 1. (1248 aa)
RAD51CRAD51 paralog C. (367 aa)
EME1Essential meiotic structure-specific endonuclease 1. (571 aa)
KXD1KxDL motif containing 1. (176 aa)
UBA52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
POLD3Uncharacterized protein. (466 aa)
RFC3Replication factor C subunit 3. (356 aa)
BRCA2BRCA2 DNA repair associated. (3420 aa)
RFC2Replication factor C subunit 2. (353 aa)
BRCA1Uncharacterized protein. (663 aa)
MRE11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (708 aa)
ATMSerine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...] (3056 aa)
RAD9BCell cycle checkpoint control protein; Belongs to the rad9 family. (417 aa)
RFC5Replication factor C subunit 5. (340 aa)
RAD51AP1RAD51 associated protein 1. (354 aa)
MEIOBMeiosis specific with OB-fold. (472 aa)
CHEK1Checkpoint kinase 1. (749 aa)
POLD1DNA polymerase. (1086 aa)
RHNO1RAD9-HUS1-RAD1 interacting nuclear orphan 1. (240 aa)
ATRATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2644 aa)
EME2Essential meiotic structure-specific endonuclease subunit 2. (383 aa)
POLHDNA polymerase eta. (712 aa)
Your Current Organism:
Chlorocebus sabaeus
NCBI taxonomy Id: 60711
Other names: C. sabaeus, Cercopithecus aethiops sabaeus, Cercopithecus sabaeus, Cercopithecus sabeus, Chlorocebus aethiops sabaeus, Chlorocebus aethiops sabeus, Chlorocebus sabeus, green monkey
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