(5 nodes) RNA polymerase, and Transcription antitermination network (Staphylococcus succinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nusA	Unannotated protein; Participates in both transcription termination and antitermination. (397 aa)
	rpoC	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1207 aa)
	rpoB	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1183 aa)
	nusG	Unannotated protein; Participates in transcription elongation, termination and antitermination. (182 aa)
	rpoA	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (314 aa)

Your Current Organism:

Staphylococcus succinus

NCBI taxonomy Id: 61015
Other names: ATCC 700337, CCUG 43571, DSM 14617, S. succinus, strain AMG-D1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
nusA	nusG	GCA_001902315_00916	GCA_001902315_01580	Unannotated protein; Participates in both transcription termination and antitermination.	Unannotated protein; Participates in transcription elongation, termination and antitermination.	0.978
nusA	rpoA	GCA_001902315_00916	GCA_001902315_02617	Unannotated protein; Participates in both transcription termination and antitermination.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
nusA	rpoB	GCA_001902315_00916	GCA_001902315_01574	Unannotated protein; Participates in both transcription termination and antitermination.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
nusA	rpoC	GCA_001902315_00916	GCA_001902315_01573	Unannotated protein; Participates in both transcription termination and antitermination.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.985
nusG	nusA	GCA_001902315_01580	GCA_001902315_00916	Unannotated protein; Participates in transcription elongation, termination and antitermination.	Unannotated protein; Participates in both transcription termination and antitermination.	0.978
nusG	rpoA	GCA_001902315_01580	GCA_001902315_02617	Unannotated protein; Participates in transcription elongation, termination and antitermination.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.968
nusG	rpoB	GCA_001902315_01580	GCA_001902315_01574	Unannotated protein; Participates in transcription elongation, termination and antitermination.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.992
nusG	rpoC	GCA_001902315_01580	GCA_001902315_01573	Unannotated protein; Participates in transcription elongation, termination and antitermination.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.970
rpoA	nusA	GCA_001902315_02617	GCA_001902315_00916	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; Participates in both transcription termination and antitermination.	0.997
rpoA	nusG	GCA_001902315_02617	GCA_001902315_01580	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; Participates in transcription elongation, termination and antitermination.	0.968
rpoA	rpoB	GCA_001902315_02617	GCA_001902315_01574	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoC	GCA_001902315_02617	GCA_001902315_01573	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	nusA	GCA_001902315_01574	GCA_001902315_00916	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; Participates in both transcription termination and antitermination.	0.997
rpoB	nusG	GCA_001902315_01574	GCA_001902315_01580	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; Participates in transcription elongation, termination and antitermination.	0.992
rpoB	rpoA	GCA_001902315_01574	GCA_001902315_02617	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoC	GCA_001902315_01574	GCA_001902315_01573	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoC	nusA	GCA_001902315_01573	GCA_001902315_00916	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; Participates in both transcription termination and antitermination.	0.985
rpoC	nusG	GCA_001902315_01573	GCA_001902315_01580	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; Participates in transcription elongation, termination and antitermination.	0.970
rpoC	rpoA	GCA_001902315_01573	GCA_001902315_02617	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoC	rpoB	GCA_001902315_01573	GCA_001902315_01574	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999