38 items (Rhinopithecus bieti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UTP15	UTP15 small subunit processome component. (488 aa)
	ENSRBIP00000011440	HELICc2 domain-containing protein. (117 aa)
	LYAR	Ly1 antibody reactive. (379 aa)
	ATF4	Activating transcription factor 4. (351 aa)
	ENSRBIP00000003050	DEK_C domain-containing protein. (193 aa)
	MTOR	Serine/threonine-protein kinase mTOR; Belongs to the PI3/PI4-kinase family. (2527 aa)
	SF3B1	Splicing factor 3b subunit 1. (1274 aa)
	BNC1	Basonuclin 1. (987 aa)
	ENSRBIP00000027327	Uncharacterized protein. (684 aa)
	MARS1	Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (905 aa)
	SMARCA5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1053 aa)
	UBTF	Upstream binding transcription factor. (764 aa)
	ENSRBIP00000041517	WD_REPEATS_REGION domain-containing protein. (478 aa)
	RASL11A	RAS like family 11 member A. (242 aa)
	BAZ1B	Bromodomain adjacent to zinc finger domain 1B. (1436 aa)
	ENSRBIP00000020652	Uncharacterized protein. (315 aa)
	PWP1	PWP1 homolog, endonuclein. (501 aa)
	DDX21	Uncharacterized protein. (783 aa)
	EIF2AK3	Eukaryotic translation initiation factor 2 alpha kinase 3. (1089 aa)
	SMARCB1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family. (385 aa)
	IPPK	Inositol-pentakisphosphate 2-kinase; Phosphorylates Ins(1,3,4,5,6)P5 at position 2 to form Ins(1,2,3,4,5,6)P6 (InsP6 or phytate). (491 aa)
	WDR43	WD repeat domain 43. (678 aa)
	MYBBP1A	MYB binding protein 1a. (1320 aa)
	DEK	SAP domain-containing protein. (348 aa)
	WDR75	WD repeat domain 75. (830 aa)
	DDX11	DEAD/H-box helicase 11. (906 aa)
	ACTR6	Actin related protein 6; Belongs to the actin family. (428 aa)
	ERCC6	ERCC excision repair 6, chromatin remodeling factor. (1484 aa)
	PIH1D1	PIH1 domain containing 1. (321 aa)
	LOC108530049	Uncharacterized protein. (497 aa)
	ENSRBIP00000023898	Uncharacterized protein. (726 aa)
	MYO1C	Myosin IC; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1051 aa)
	NOL11	Nucleolar protein 11. (615 aa)
	DHX33	DEAH-box helicase 33. (707 aa)
	HEATR1	HEAT repeat containing 1. (2142 aa)
	ERBB2	Receptor protein-tyrosine kinase. (1255 aa)
	ENSRBIP00000031309	NUC205 domain-containing protein. (646 aa)
	SMARCA4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4. (1679 aa)

Your Current Organism:

Rhinopithecus bieti

NCBI taxonomy Id: 61621
Other names: Pygathrix bieti, R. bieti, black snub-nosed monkey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATF4	EIF2AK3	ENSRBIP00000016708	ENSRBIP00000009839	Activating transcription factor 4.	Eukaryotic translation initiation factor 2 alpha kinase 3.	0.967
BAZ1B	DDX21	ENSRBIP00000019319	ENSRBIP00000040622	Bromodomain adjacent to zinc finger domain 1B.	Uncharacterized protein.	0.644
BAZ1B	DEK	ENSRBIP00000019319	ENSRBIP00000002659	Bromodomain adjacent to zinc finger domain 1B.	SAP domain-containing protein.	0.720
BAZ1B	ENSRBIP00000003050	ENSRBIP00000019319	ENSRBIP00000003050	Bromodomain adjacent to zinc finger domain 1B.	DEK_C domain-containing protein.	0.720
BAZ1B	ENSRBIP00000023898	ENSRBIP00000019319	ENSRBIP00000023898	Bromodomain adjacent to zinc finger domain 1B.	Uncharacterized protein.	0.644
BAZ1B	ERCC6	ENSRBIP00000019319	ENSRBIP00000022776	Bromodomain adjacent to zinc finger domain 1B.	ERCC excision repair 6, chromatin remodeling factor.	0.844
BAZ1B	MYBBP1A	ENSRBIP00000019319	ENSRBIP00000009381	Bromodomain adjacent to zinc finger domain 1B.	MYB binding protein 1a.	0.886
BAZ1B	MYO1C	ENSRBIP00000019319	ENSRBIP00000033034	Bromodomain adjacent to zinc finger domain 1B.	Myosin IC; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.718
BAZ1B	SF3B1	ENSRBIP00000019319	ENSRBIP00000006358	Bromodomain adjacent to zinc finger domain 1B.	Splicing factor 3b subunit 1.	0.892
BAZ1B	SMARCA4	ENSRBIP00000019319	ENSRBIP00000029655	Bromodomain adjacent to zinc finger domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.518
BAZ1B	SMARCA5	ENSRBIP00000019319	ENSRBIP00000042837	Bromodomain adjacent to zinc finger domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.984
BAZ1B	WDR75	ENSRBIP00000019319	ENSRBIP00000025733	Bromodomain adjacent to zinc finger domain 1B.	WD repeat domain 75.	0.486
DDX21	BAZ1B	ENSRBIP00000040622	ENSRBIP00000019319	Uncharacterized protein.	Bromodomain adjacent to zinc finger domain 1B.	0.644
DDX21	DEK	ENSRBIP00000040622	ENSRBIP00000002659	Uncharacterized protein.	SAP domain-containing protein.	0.503
DDX21	DHX33	ENSRBIP00000040622	ENSRBIP00000032600	Uncharacterized protein.	DEAH-box helicase 33.	0.548
DDX21	ENSRBIP00000003050	ENSRBIP00000040622	ENSRBIP00000003050	Uncharacterized protein.	DEK_C domain-containing protein.	0.503
DDX21	ERCC6	ENSRBIP00000040622	ENSRBIP00000022776	Uncharacterized protein.	ERCC excision repair 6, chromatin remodeling factor.	0.479
DDX21	HEATR1	ENSRBIP00000040622	ENSRBIP00000032502	Uncharacterized protein.	HEAT repeat containing 1.	0.526
DDX21	MYBBP1A	ENSRBIP00000040622	ENSRBIP00000009381	Uncharacterized protein.	MYB binding protein 1a.	0.758
DDX21	MYO1C	ENSRBIP00000040622	ENSRBIP00000033034	Uncharacterized protein.	Myosin IC; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.587