10 items (Rhinopithecus bieti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ADIPOQ	Adiponectin, C1Q and collagen domain containing. (275 aa)
	GNA12	G protein subunit alpha 12. (322 aa)
	TAFA5	TAFA chemokine like family member 5. (180 aa)
	MYOCD	Myocardin. (832 aa)
	MEF2C	Myocyte enhancer factor 2C. (483 aa)
	LOC108543404	Uncharacterized protein. (268 aa)
	NFE2L2	Nuclear factor, erythroid 2 like 2. (605 aa)
	ENSRBIP00000041597	Cyclic nucleotide-binding domain-containing protein. (199 aa)
	NF1	Neurofibromin 1. (2822 aa)
	GNA13	G protein subunit alpha 13. (353 aa)

Your Current Organism:

Rhinopithecus bieti

NCBI taxonomy Id: 61621
Other names: Pygathrix bieti, R. bieti, black snub-nosed monkey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSRBIP00000041597	LOC108543404	ENSRBIP00000041597	ENSRBIP00000035099	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein.	0.774
GNA12	GNA13	ENSRBIP00000019387	ENSRBIP00000009729	G protein subunit alpha 12.	G protein subunit alpha 13.	0.986
GNA13	GNA12	ENSRBIP00000009729	ENSRBIP00000019387	G protein subunit alpha 13.	G protein subunit alpha 12.	0.986
LOC108543404	ENSRBIP00000041597	ENSRBIP00000035099	ENSRBIP00000041597	Uncharacterized protein.	Cyclic nucleotide-binding domain-containing protein.	0.774
MEF2C	MYOCD	ENSRBIP00000033689	ENSRBIP00000026523	Myocyte enhancer factor 2C.	Myocardin.	0.479
MYOCD	MEF2C	ENSRBIP00000026523	ENSRBIP00000033689	Myocardin.	Myocyte enhancer factor 2C.	0.479