12 items (Rhinopithecus bieti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RIOK1	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (567 aa)
	DIMT1	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (312 aa)
	TRMT112	Uncharacterized protein. (124 aa)
	ENSRBIP00000034877	Uncharacterized protein. (119 aa)
	HEATR1	HEAT repeat containing 1. (2142 aa)
	SIRT7	Sirtuin 7. (421 aa)
	LOC108513368	Uncharacterized protein. (125 aa)
	BUD23	BUD23 rRNA methyltransferase and ribosome maturation factor. (279 aa)
	WDR75	WD repeat domain 75. (830 aa)
	UTP15	UTP15 small subunit processome component. (488 aa)
	RIOK2	RIO kinase 2. (552 aa)
	WDR43	WD repeat domain 43. (678 aa)

Your Current Organism:

Rhinopithecus bieti

NCBI taxonomy Id: 61621
Other names: Pygathrix bieti, R. bieti, black snub-nosed monkey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BUD23	DIMT1	ENSRBIP00000027861	ENSRBIP00000039371	BUD23 rRNA methyltransferase and ribosome maturation factor.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.955
BUD23	ENSRBIP00000034877	ENSRBIP00000027861	ENSRBIP00000034877	BUD23 rRNA methyltransferase and ribosome maturation factor.	Uncharacterized protein.	0.932
BUD23	LOC108513368	ENSRBIP00000027861	ENSRBIP00000031606	BUD23 rRNA methyltransferase and ribosome maturation factor.	Uncharacterized protein.	0.932
BUD23	RIOK1	ENSRBIP00000027861	ENSRBIP00000025615	BUD23 rRNA methyltransferase and ribosome maturation factor.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.797
BUD23	RIOK2	ENSRBIP00000027861	ENSRBIP00000013283	BUD23 rRNA methyltransferase and ribosome maturation factor.	RIO kinase 2.	0.924
BUD23	TRMT112	ENSRBIP00000027861	ENSRBIP00000038773	BUD23 rRNA methyltransferase and ribosome maturation factor.	Uncharacterized protein.	0.932
BUD23	WDR43	ENSRBIP00000027861	ENSRBIP00000006534	BUD23 rRNA methyltransferase and ribosome maturation factor.	WD repeat domain 43.	0.554
DIMT1	BUD23	ENSRBIP00000039371	ENSRBIP00000027861	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	BUD23 rRNA methyltransferase and ribosome maturation factor.	0.955
DIMT1	ENSRBIP00000034877	ENSRBIP00000039371	ENSRBIP00000034877	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Uncharacterized protein.	0.664
DIMT1	HEATR1	ENSRBIP00000039371	ENSRBIP00000032502	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	HEAT repeat containing 1.	0.958
DIMT1	LOC108513368	ENSRBIP00000039371	ENSRBIP00000031606	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Uncharacterized protein.	0.664
DIMT1	RIOK2	ENSRBIP00000039371	ENSRBIP00000013283	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	RIO kinase 2.	0.983
DIMT1	TRMT112	ENSRBIP00000039371	ENSRBIP00000038773	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	Uncharacterized protein.	0.664
DIMT1	UTP15	ENSRBIP00000039371	ENSRBIP00000013998	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	UTP15 small subunit processome component.	0.941
DIMT1	WDR43	ENSRBIP00000039371	ENSRBIP00000006534	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	WD repeat domain 43.	0.973
DIMT1	WDR75	ENSRBIP00000039371	ENSRBIP00000025733	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	WD repeat domain 75.	0.956
ENSRBIP00000034877	BUD23	ENSRBIP00000034877	ENSRBIP00000027861	Uncharacterized protein.	BUD23 rRNA methyltransferase and ribosome maturation factor.	0.932
ENSRBIP00000034877	DIMT1	ENSRBIP00000034877	ENSRBIP00000039371	Uncharacterized protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.664
ENSRBIP00000034877	WDR75	ENSRBIP00000034877	ENSRBIP00000025733	Uncharacterized protein.	WD repeat domain 75.	0.420
HEATR1	DIMT1	ENSRBIP00000032502	ENSRBIP00000039371	HEAT repeat containing 1.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.958