7 items (Rhinopithecus bieti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	COLEC11	Collectin subfamily member 11. (269 aa)
	LOC108518098	C-type lectin domain-containing protein. (248 aa)
	LOC108518088	C-type lectin domain-containing protein. (249 aa)
	COLEC10	Collectin subfamily member 10. (276 aa)
	MBL2	Mannose binding lectin 2. (247 aa)
	LOC108518097	C-type lectin domain-containing protein. (336 aa)
	SFTPD	Surfactant protein D. (414 aa)

Your Current Organism:

Rhinopithecus bieti

NCBI taxonomy Id: 61621
Other names: Pygathrix bieti, R. bieti, black snub-nosed monkey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COLEC10	COLEC11	ENSRBIP00000014113	ENSRBIP00000035466	Collectin subfamily member 10.	Collectin subfamily member 11.	0.899
COLEC10	LOC108518088	ENSRBIP00000014113	ENSRBIP00000012366	Collectin subfamily member 10.	C-type lectin domain-containing protein.	0.516
COLEC10	MBL2	ENSRBIP00000014113	ENSRBIP00000019785	Collectin subfamily member 10.	Mannose binding lectin 2.	0.440
COLEC10	SFTPD	ENSRBIP00000014113	ENSRBIP00000036157	Collectin subfamily member 10.	Surfactant protein D.	0.478
COLEC11	COLEC10	ENSRBIP00000035466	ENSRBIP00000014113	Collectin subfamily member 11.	Collectin subfamily member 10.	0.899
COLEC11	LOC108518088	ENSRBIP00000035466	ENSRBIP00000012366	Collectin subfamily member 11.	C-type lectin domain-containing protein.	0.405
COLEC11	MBL2	ENSRBIP00000035466	ENSRBIP00000019785	Collectin subfamily member 11.	Mannose binding lectin 2.	0.619
COLEC11	SFTPD	ENSRBIP00000035466	ENSRBIP00000036157	Collectin subfamily member 11.	Surfactant protein D.	0.405
LOC108518088	COLEC10	ENSRBIP00000012366	ENSRBIP00000014113	C-type lectin domain-containing protein.	Collectin subfamily member 10.	0.516
LOC108518088	COLEC11	ENSRBIP00000012366	ENSRBIP00000035466	C-type lectin domain-containing protein.	Collectin subfamily member 11.	0.405
LOC108518088	LOC108518097	ENSRBIP00000012366	ENSRBIP00000032636	C-type lectin domain-containing protein.	C-type lectin domain-containing protein.	0.587
LOC108518088	LOC108518098	ENSRBIP00000012366	ENSRBIP00000004968	C-type lectin domain-containing protein.	C-type lectin domain-containing protein.	0.587
LOC108518088	MBL2	ENSRBIP00000012366	ENSRBIP00000019785	C-type lectin domain-containing protein.	Mannose binding lectin 2.	0.918
LOC108518097	LOC108518088	ENSRBIP00000032636	ENSRBIP00000012366	C-type lectin domain-containing protein.	C-type lectin domain-containing protein.	0.587
LOC108518097	SFTPD	ENSRBIP00000032636	ENSRBIP00000036157	C-type lectin domain-containing protein.	Surfactant protein D.	0.780
LOC108518098	LOC108518088	ENSRBIP00000004968	ENSRBIP00000012366	C-type lectin domain-containing protein.	C-type lectin domain-containing protein.	0.587
LOC108518098	SFTPD	ENSRBIP00000004968	ENSRBIP00000036157	C-type lectin domain-containing protein.	Surfactant protein D.	0.774
MBL2	COLEC10	ENSRBIP00000019785	ENSRBIP00000014113	Mannose binding lectin 2.	Collectin subfamily member 10.	0.440
MBL2	COLEC11	ENSRBIP00000019785	ENSRBIP00000035466	Mannose binding lectin 2.	Collectin subfamily member 11.	0.619
MBL2	LOC108518088	ENSRBIP00000019785	ENSRBIP00000012366	Mannose binding lectin 2.	C-type lectin domain-containing protein.	0.918