37 items (Rhinopithecus bieti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRAF6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (522 aa)
	TRIM4	Tripartite motif containing 4. (474 aa)
	LOC108528435	Serum amyloid A protein; Major acute phase reactant. Apolipoprotein of the HDL complex. (130 aa)
	MAP3K1	Mitogen-activated protein kinase kinase kinase 1. (1374 aa)
	ENSRBIP00000002911	Uncharacterized protein. (190 aa)
	HMGB1-2	Uncharacterized protein. (215 aa)
	NFKBIA	NFKB inhibitor alpha. (317 aa)
	TRIM25	Tripartite motif containing 25. (630 aa)
	ENSRBIP00000038500	RHD domain-containing protein. (112 aa)
	APP	Amyloid beta precursor protein. (770 aa)
	LOC108524385	Uncharacterized protein. (348 aa)
	ENSRBIP00000006958	TNF receptor-associated factor. (473 aa)
	NKIRAS1	NFKB inhibitor interacting Ras like 1. (192 aa)
	NFKB2	Nuclear factor kappa B subunit 2. (906 aa)
	IFIH1	Interferon induced with helicase C domain 1. (1014 aa)
	S100B	S_100 domain-containing protein; Belongs to the S-100 family. (94 aa)
	NFKB1	Nuclear factor kappa B subunit 1. (969 aa)
	S100A12	S100 calcium binding protein A12; Belongs to the S-100 family. (90 aa)
	HMGB1	Uncharacterized protein. (181 aa)
	IKBKG	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma. (347 aa)
	RNF135	Ring finger protein 135. (421 aa)
	ENSRBIP00000017090	Uncharacterized protein. (120 aa)
	RELA	Uncharacterized protein. (282 aa)
	NFKBIB	NFKB inhibitor beta. (338 aa)
	MAVS	Mitochondrial antiviral signaling protein. (539 aa)
	AGER	Uncharacterized protein. (417 aa)
	CHUK	Component of inhibitor of nuclear factor kappa B kinase complex. (745 aa)
	ENSRBIP00000026978	Uncharacterized protein. (179 aa)
	IKBKB	Inhibitor of nuclear factor kappa B kinase subunit beta. (789 aa)
	TRAF2	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (501 aa)
	ENSRBIP00000032381	Uncharacterized protein. (130 aa)
	DDX58	DExD/H-box helicase 58. (914 aa)
	CCDC71L	Coiled-coil domain containing 71 like. (235 aa)
	ENSRBIP00000033992	Uncharacterized protein. (157 aa)
	NKIRAS2	NFKB inhibitor interacting Ras like 2. (231 aa)
	LOC108528453	Serum amyloid A protein; Major acute phase reactant. Apolipoprotein of the HDL complex. (122 aa)
	ENSRBIP00000035735	Uncharacterized protein. (100 aa)

Your Current Organism:

Rhinopithecus bieti

NCBI taxonomy Id: 61621
Other names: Pygathrix bieti, R. bieti, black snub-nosed monkey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGER	APP	ENSRBIP00000023070	ENSRBIP00000038205	Uncharacterized protein.	Amyloid beta precursor protein.	0.520
AGER	ENSRBIP00000002911	ENSRBIP00000023070	ENSRBIP00000002911	Uncharacterized protein.	Uncharacterized protein.	0.431
AGER	ENSRBIP00000017090	ENSRBIP00000023070	ENSRBIP00000017090	Uncharacterized protein.	Uncharacterized protein.	0.431
AGER	ENSRBIP00000026978	ENSRBIP00000023070	ENSRBIP00000026978	Uncharacterized protein.	Uncharacterized protein.	0.431
AGER	ENSRBIP00000032381	ENSRBIP00000023070	ENSRBIP00000032381	Uncharacterized protein.	Uncharacterized protein.	0.431
AGER	ENSRBIP00000033992	ENSRBIP00000023070	ENSRBIP00000033992	Uncharacterized protein.	Uncharacterized protein.	0.431
AGER	HMGB1	ENSRBIP00000023070	ENSRBIP00000015128	Uncharacterized protein.	Uncharacterized protein.	0.431
AGER	HMGB1-2	ENSRBIP00000023070	ENSRBIP00000005571	Uncharacterized protein.	Uncharacterized protein.	0.431
AGER	S100A12	ENSRBIP00000023070	ENSRBIP00000013885	Uncharacterized protein.	S100 calcium binding protein A12; Belongs to the S-100 family.	0.713
AGER	S100B	ENSRBIP00000023070	ENSRBIP00000011863	Uncharacterized protein.	S_100 domain-containing protein; Belongs to the S-100 family.	0.932
APP	AGER	ENSRBIP00000038205	ENSRBIP00000023070	Amyloid beta precursor protein.	Uncharacterized protein.	0.520
APP	LOC108524385	ENSRBIP00000038205	ENSRBIP00000036734	Amyloid beta precursor protein.	Uncharacterized protein.	0.520
APP	NFKB1	ENSRBIP00000038205	ENSRBIP00000012337	Amyloid beta precursor protein.	Nuclear factor kappa B subunit 1.	0.588
APP	NFKB2	ENSRBIP00000038205	ENSRBIP00000008363	Amyloid beta precursor protein.	Nuclear factor kappa B subunit 2.	0.482
APP	S100B	ENSRBIP00000038205	ENSRBIP00000011863	Amyloid beta precursor protein.	S_100 domain-containing protein; Belongs to the S-100 family.	0.497
CHUK	ENSRBIP00000006958	ENSRBIP00000023948	ENSRBIP00000006958	Component of inhibitor of nuclear factor kappa B kinase complex.	TNF receptor-associated factor.	0.830
CHUK	ENSRBIP00000038500	ENSRBIP00000023948	ENSRBIP00000038500	Component of inhibitor of nuclear factor kappa B kinase complex.	RHD domain-containing protein.	0.829
CHUK	IKBKB	ENSRBIP00000023948	ENSRBIP00000027811	Component of inhibitor of nuclear factor kappa B kinase complex.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.999
CHUK	IKBKG	ENSRBIP00000023948	ENSRBIP00000015173	Component of inhibitor of nuclear factor kappa B kinase complex.	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.999
CHUK	MAP3K1	ENSRBIP00000023948	ENSRBIP00000001091	Component of inhibitor of nuclear factor kappa B kinase complex.	Mitogen-activated protein kinase kinase kinase 1.	0.947