36 items (Rhinopithecus bieti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108529634	Ubiquitin-like domain-containing protein. (128 aa)
	KHNYN	KH and NYN domain containing. (678 aa)
	ENSRBIP00000006958	TNF receptor-associated factor. (473 aa)
	UBA52	Ubiquitin-like domain-containing protein. (232 aa)
	LRRC14	Leucine rich repeat containing 14. (493 aa)
	LRRC34	Leucine rich repeat containing 34. (457 aa)
	NLRP9	NLR family pyrin domain containing 9. (933 aa)
	NLRP13	NLR family pyrin domain containing 13. (1044 aa)
	ENSRBIP00000012514	Ubiquitin-like domain-containing protein. (121 aa)
	LRRC74A	Leucine rich repeat containing 74A. (485 aa)
	LRRC31	Leucine rich repeat containing 31. (552 aa)
	IKBKG	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma. (347 aa)
	NLRP6	NLR family pyrin domain containing 6. (1041 aa)
	ENSRBIP00000020228	Uncharacterized protein. (132 aa)
	LRRC71	Leucine rich repeat containing 71. (559 aa)
	N4BP1	NEDD4 binding protein 1. (895 aa)
	CHUK	Component of inhibitor of nuclear factor kappa B kinase complex. (745 aa)
	LOC108524569	Ubiquitin-like domain-containing protein. (141 aa)
	NLRX1	NLR family member X1. (972 aa)
	IKBKB	Inhibitor of nuclear factor kappa B kinase subunit beta. (789 aa)
	TP53	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. (393 aa)
	ENSRBIP00000029173	Ubiquitin-like domain-containing protein. (166 aa)
	TRAF2	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (501 aa)
	VWC2	Von Willebrand factor C domain containing 2. (325 aa)
	NLRC5	NLR family CARD domain containing 5. (1866 aa)
	TRAF6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (522 aa)
	LRRC45	Leucine rich repeat containing 45. (669 aa)
	CASP8	Caspase 8; Belongs to the peptidase C14A family. (542 aa)
	USP14	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family. (493 aa)
	RPS27A	Ubiquitin-like domain-containing protein. (156 aa)
	ENSRBIP00000001317	Ubiquitin-like domain-containing protein. (155 aa)
	TONSL	Tonsoku like, DNA repair protein. (1367 aa)
	ENSRBIP00000003802	Ubiquitin-like domain-containing protein. (84 aa)
	ENSRBIP00000004187	Ubiquitin-like domain-containing protein. (153 aa)
	ENSRBIP00000004747	Ubiquitin-like domain-containing protein. (128 aa)
	LOC108540530	Ubiquitin A-52 residue ribosomal protein fusion product 1. (77 aa)

Your Current Organism:

Rhinopithecus bieti

NCBI taxonomy Id: 61621
Other names: Pygathrix bieti, R. bieti, black snub-nosed monkey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CASP8	CHUK	ENSRBIP00000042695	ENSRBIP00000023948	Caspase 8; Belongs to the peptidase C14A family.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.638
CASP8	ENSRBIP00000006958	ENSRBIP00000042695	ENSRBIP00000006958	Caspase 8; Belongs to the peptidase C14A family.	TNF receptor-associated factor.	0.683
CASP8	IKBKG	ENSRBIP00000042695	ENSRBIP00000015173	Caspase 8; Belongs to the peptidase C14A family.	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.805
CASP8	KHNYN	ENSRBIP00000042695	ENSRBIP00000006627	Caspase 8; Belongs to the peptidase C14A family.	KH and NYN domain containing.	0.535
CASP8	N4BP1	ENSRBIP00000042695	ENSRBIP00000022104	Caspase 8; Belongs to the peptidase C14A family.	NEDD4 binding protein 1.	0.602
CASP8	TP53	ENSRBIP00000042695	ENSRBIP00000028632	Caspase 8; Belongs to the peptidase C14A family.	Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.	0.966
CASP8	TRAF2	ENSRBIP00000042695	ENSRBIP00000031083	Caspase 8; Belongs to the peptidase C14A family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.917
CASP8	TRAF6	ENSRBIP00000042695	ENSRBIP00000036224	Caspase 8; Belongs to the peptidase C14A family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.683
CHUK	CASP8	ENSRBIP00000023948	ENSRBIP00000042695	Component of inhibitor of nuclear factor kappa B kinase complex.	Caspase 8; Belongs to the peptidase C14A family.	0.638
CHUK	ENSRBIP00000001317	ENSRBIP00000023948	ENSRBIP00000001317	Component of inhibitor of nuclear factor kappa B kinase complex.	Ubiquitin-like domain-containing protein.	0.449
CHUK	ENSRBIP00000003802	ENSRBIP00000023948	ENSRBIP00000003802	Component of inhibitor of nuclear factor kappa B kinase complex.	Ubiquitin-like domain-containing protein.	0.449
CHUK	ENSRBIP00000004187	ENSRBIP00000023948	ENSRBIP00000004187	Component of inhibitor of nuclear factor kappa B kinase complex.	Ubiquitin-like domain-containing protein.	0.449
CHUK	ENSRBIP00000004747	ENSRBIP00000023948	ENSRBIP00000004747	Component of inhibitor of nuclear factor kappa B kinase complex.	Ubiquitin-like domain-containing protein.	0.457
CHUK	ENSRBIP00000006958	ENSRBIP00000023948	ENSRBIP00000006958	Component of inhibitor of nuclear factor kappa B kinase complex.	TNF receptor-associated factor.	0.830
CHUK	ENSRBIP00000012514	ENSRBIP00000023948	ENSRBIP00000012514	Component of inhibitor of nuclear factor kappa B kinase complex.	Ubiquitin-like domain-containing protein.	0.457
CHUK	ENSRBIP00000020228	ENSRBIP00000023948	ENSRBIP00000020228	Component of inhibitor of nuclear factor kappa B kinase complex.	Uncharacterized protein.	0.617
CHUK	ENSRBIP00000029173	ENSRBIP00000023948	ENSRBIP00000029173	Component of inhibitor of nuclear factor kappa B kinase complex.	Ubiquitin-like domain-containing protein.	0.449
CHUK	IKBKB	ENSRBIP00000023948	ENSRBIP00000027811	Component of inhibitor of nuclear factor kappa B kinase complex.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.999
CHUK	IKBKG	ENSRBIP00000023948	ENSRBIP00000015173	Component of inhibitor of nuclear factor kappa B kinase complex.	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.999
CHUK	LOC108524569	ENSRBIP00000023948	ENSRBIP00000025262	Component of inhibitor of nuclear factor kappa B kinase complex.	Ubiquitin-like domain-containing protein.	0.457