(12 nodes) Mixed, incl. Dpy-19/Dpy-19-like, and Dynein-f, intermediate chain IC97/Dnai7-like network (Rhinopithecus roxellana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HIPK4	Homeodomain interacting protein kinase 4. (616 aa)
	ENSRROP00000009151	Uncharacterized protein. (198 aa)
	C7orf61	Chromosome 7 open reading frame 61. (206 aa)
	DPY19L2	Uncharacterized protein. (758 aa)
	LOC104670044	Casc1_N domain-containing protein. (380 aa)
	ZPBP	Zona pellucida binding protein. (351 aa)
	LOC104675229	Uncharacterized protein. (85 aa)
	SPATA16	Spermatogenesis associated 16. (569 aa)
	TSC22D4	TSC22 domain family member 4. (395 aa)
	CCDC62	Coiled-coil domain containing 62. (683 aa)
	C2CD6	C2 calcium dependent domain containing 6. (1820 aa)
	CASC1	Uncharacterized protein. (388 aa)

Your Current Organism:

Rhinopithecus roxellana

NCBI taxonomy Id: 61622
Other names: Pygathrix roxellana, R. roxellana, golden snub-nosed monkey

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2CD6	C7orf61	ENSRROP00000041129	ENSRROP00000014600	C2 calcium dependent domain containing 6.	Chromosome 7 open reading frame 61.	0.509
C2CD6	CCDC62	ENSRROP00000041129	ENSRROP00000041017	C2 calcium dependent domain containing 6.	Coiled-coil domain containing 62.	0.400
C2CD6	SPATA16	ENSRROP00000041129	ENSRROP00000038155	C2 calcium dependent domain containing 6.	Spermatogenesis associated 16.	0.454
C7orf61	C2CD6	ENSRROP00000014600	ENSRROP00000041129	Chromosome 7 open reading frame 61.	C2 calcium dependent domain containing 6.	0.509
C7orf61	SPATA16	ENSRROP00000014600	ENSRROP00000038155	Chromosome 7 open reading frame 61.	Spermatogenesis associated 16.	0.602
C7orf61	TSC22D4	ENSRROP00000014600	ENSRROP00000039352	Chromosome 7 open reading frame 61.	TSC22 domain family member 4.	0.787
C7orf61	ZPBP	ENSRROP00000014600	ENSRROP00000027992	Chromosome 7 open reading frame 61.	Zona pellucida binding protein.	0.658
CASC1	DPY19L2	ENSRROP00000043021	ENSRROP00000015193	Uncharacterized protein.	Uncharacterized protein.	0.426
CASC1	ENSRROP00000009151	ENSRROP00000043021	ENSRROP00000009151	Uncharacterized protein.	Uncharacterized protein.	0.426
CASC1	LOC104670044	ENSRROP00000043021	ENSRROP00000024502	Uncharacterized protein.	Casc1_N domain-containing protein.	0.932
CASC1	LOC104675229	ENSRROP00000043021	ENSRROP00000030197	Uncharacterized protein.	Uncharacterized protein.	0.426
CCDC62	C2CD6	ENSRROP00000041017	ENSRROP00000041129	Coiled-coil domain containing 62.	C2 calcium dependent domain containing 6.	0.400
CCDC62	SPATA16	ENSRROP00000041017	ENSRROP00000038155	Coiled-coil domain containing 62.	Spermatogenesis associated 16.	0.677
DPY19L2	CASC1	ENSRROP00000015193	ENSRROP00000043021	Uncharacterized protein.	Uncharacterized protein.	0.426
DPY19L2	LOC104670044	ENSRROP00000015193	ENSRROP00000024502	Uncharacterized protein.	Casc1_N domain-containing protein.	0.426
ENSRROP00000009151	CASC1	ENSRROP00000009151	ENSRROP00000043021	Uncharacterized protein.	Uncharacterized protein.	0.426
ENSRROP00000009151	LOC104670044	ENSRROP00000009151	ENSRROP00000024502	Uncharacterized protein.	Casc1_N domain-containing protein.	0.426
HIPK4	ZPBP	ENSRROP00000000859	ENSRROP00000027992	Homeodomain interacting protein kinase 4.	Zona pellucida binding protein.	0.572
LOC104670044	CASC1	ENSRROP00000024502	ENSRROP00000043021	Casc1_N domain-containing protein.	Uncharacterized protein.	0.932
LOC104670044	DPY19L2	ENSRROP00000024502	ENSRROP00000015193	Casc1_N domain-containing protein.	Uncharacterized protein.	0.426